Gene Caci_6062 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_6062 
Symbol 
ID8337425 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp6983880 
End bp6984590 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content69% 
IMG OID644959166 
ProductEndonuclease/exonuclease/phosphatase 
Protein accessionYP_003116760 
Protein GI256395196 
COG category[R] General function prediction only 
COG ID[COG3568] Metal-dependent hydrolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.640142 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGGAGA CAGTACGGAT ACTCACTTAT AACGTGCGGT CCTTAAGAGA CGACCGCGCA 
GCCCTGGCAC GCGTTGTGCG CTCTTGTGCG CCGGATGTGG TGTGCGTCCA GGAGTCGCCC
CGCTTCTTCG GCTGGCAGCG TGCCGCGCGG ACGATGGCGG CGTCGTTCGG GCTCAGCGTG
GTCGCCGGCG GCGCCAACGC CTCGGGCAAC CTGTTGCTGG CCGGGCCGAA CGTCGAGGTG
GACGCCGCGG AGGTGCTCTA CCTGGAGCAC AAGCGGGGTT ACCACCTGCG GGGTATGGCG
CTCGCCGCGC TGCGGATCGG CGCCAGCCGG TTCACCGTCG CCTCCACGCA CCTGAGCATG
AATCTGGAAC AGCGCGTCCA CCAGGCCGGG GAGGTGCTGG GGCATCTCGA CGGGTTCGCC
GAGCGCAACC AGACCACGTC GCGGGTCCTG GCCGGGGACT TCAACAGCTA CCCGGGCAGT
GTGGAGTGGG GCATCCTCAC CGAGCGGCTG GCCGACGCGT GGATGGTCTC GCCGATGGGA
GACGAGTTCA CCTCCACCGG ACCGAATCCC TATCAGCGGT TGGACGCGGT GTTCGTCTCC
AGGGACGTCG ACGTCGTCCG CGCGGGCGTG CCGACGGACC TCATCGCCAA GGCCGACGAG
GCGCTGGCCA GCGACCACCG GCCGGTGCTC GCGGTGCTGC GGATCGGGTG A
 
Protein sequence
MEETVRILTY NVRSLRDDRA ALARVVRSCA PDVVCVQESP RFFGWQRAAR TMAASFGLSV 
VAGGANASGN LLLAGPNVEV DAAEVLYLEH KRGYHLRGMA LAALRIGASR FTVASTHLSM
NLEQRVHQAG EVLGHLDGFA ERNQTTSRVL AGDFNSYPGS VEWGILTERL ADAWMVSPMG
DEFTSTGPNP YQRLDAVFVS RDVDVVRAGV PTDLIAKADE ALASDHRPVL AVLRIG