Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_6026 |
Symbol | |
ID | 8337389 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 6945319 |
End bp | 6947547 |
Gene Length | 2229 bp |
Protein Length | 742 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644959130 |
Product | helicase, RecD/TraA family |
Protein accession | YP_003116724 |
Protein GI | 256395160 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
TIGRFAM ID | [TIGR01448] helicase, putative, RecD/TraA family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.143293 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGCCGCAC CGACCACCGA GCCCCACGGC ACCCTGTCGG TCGTCGAGGG CGTGCTGGAG CGGATCACCT TCGCCAACGA GGAGACCGGC TACACCGTCG CGCGCGTCGA CACCGGCCAC GGCGCCGCCG ACCTGCTGAC AGTGGTCGGC GCGCTGCTCG GCGCGCAGCC CGGCGAATCG CTGCGGATGC GCGGCCGCTG GGGCTCGCAT CCGCAGTACG GCAAGCAGTT CATGGTCGAC AACTACACGC AGGTCCTCCC GGCGACCGTC GCGGGCATCC AGAAGTACCT GGGCTCCGGA CTCATCAAGG GCATCGGCCC GAAGACCGCC GAGAAGATCG TCGGCCACTT CGGCGTGGAC ACACTCACGG TCATCGACGA GACGCCGGCC CGCCTGATCG AGGTCCCGAC CCTGGGACCG AAGCGCACCA AGCTCATCGC GGCAGCGTGG ATCGAGCAGA AGGCCATCAA AGAGGTCATG GTCTTCCTGC AGTCGGTCGG GGTGACCACA TCGATCTCGG TGCGGATCTA CAAGGAGTAC GGCGACGCCT CGATCGACGT CGTGAAACAG GAGCCTTACA AGCTCGCCTC GGACGTGTGG GGCATCGGCT TCAAGACCGC CGACGCGATC GCGGTGGCTG TCGGCATCCC GCACGACTCG CCGGAGCGCG TAAAGGCCGG CATCCAGTAC GCGCTATCGC AGAGCTCTGA CGCTGGTAAC TGCTATCTGC CACGCGAGAA GCTCCTGGAG GAGTCTGTCA AAATCCTGAC GGTCCCCACC GAGCTCACCT CCCACTGCCT TGATGAACTC ATCGAGGCAG AGGGAGTCGT CGCCGAGGAC ATCCCGGATC CCGACGGCTA CGACCCCGAC GAGCCGATTC GCGCCATCTA CCTCGTTCCC TTCCACCGCG CCGAAGCCTC GCTGGCCGCC CAGCTACGGC GCCTGCTGGA GGCGCCGGAC GACCGCCTCG CCTCGTTCGC CACGGTCGAC TGGGACAAGG CTCTGGGCTG GCTGAAGGAC CGCACCGGCG CCGACCTCGC GCCGGAGCAG ACCGCGGCGG TGCAGCAGGC GCTGACGGCG AAAGTCAGTG TCCTGACCGG CGGCCCGGGC TGCGGCAAGT CGTTCACGGT GCGCTCGATC GTGGAGTTGG CGCAGGCCAA GCGGGCGCGC GTGGTCCTGG CCGCCCCGAC CGGCAAGGCA GCCAAGCGCC TGACCGAGCT GACCGGCGCC GAGGCGATGA CCGTGCACCG CCTGCTGGAG CTCAAGCCAG GCGGGGACGC CGCGTACGAC CGGGACCGGC CGCTGGAGGC CGACCTCGTG GTGGTGGACG AAGCCTCGAT GCTGGACGTC CTGCTGGCGA ACAAACTGGT CAAGGCCGTC GCCCCCGGCG CACACCTGTT GCTGGTCGGC GACGTGGACC AGCTCCCCTC CGTCGGCGCC GGCGAGGTGC TGCGCGATCT CCTAGCCGCG CCCCGAGTGC CCCGCGTACG CCTGACGCAA GTCTTCCGCC AGGCGCAACA GTCCGGCGTC GTGGTGAACG CGCACCGGAT CAACTCGGGG AAACCGTTGG AGCTCAAGGG ATTCGACGAC TTCTTCCTGT TCGTCGAGGA CGAGACCGAG GACGCCGCAC GCGTCGCCGT CGAGCTGGCC ACGACCCGCA TCCCCAAACG CTTCGGCTTC GACCCCCGCC GCGACATCCA GGTTCTGACT CCCATGCACC GCGGCCCAGC CGGCGCCGGA ACCCTCAATG GGCTCCTGCA AGAAACGCTG ACCCCCTCCC AGCCCTCGCG CCCCGAGAAG CGCTTCGGCG GCCGCACCTT CCGCGTCGGC GACAAGGTCA CGCAGATCCG CAACAACTAC GACAAGGGAA AGAACGGCGT CTTCAACGGC ACCGGCGGCG TCATCACCTC CATGCTCCTG GAGGAGCAGA CCCTGGTGGT ACACACCGAC GAGGACGAAG AGGTGACGTA TGAGTTCGCG GAGCTGGACG AGCTACAGCA CGCCTACGCC ATGACAGTGC ACCGATCGCA GGGCTCTGAA TACCCCGTAG TTGTGGTCCC CGTGACAATG AGCGCCTGGA TGATGCTGCA ACGAAACCTG CTCTACACGG CAGTCACGCG CGCGAAGAAG CTGGTGGTCC TGGTCGGCTC GAAACGCGCC CTGGCACAAG CGATCCGCAC GATGTCCGCA GGCAAACGCT TCACCGGCCT GGACTACCGC CTGCGATGA
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Protein sequence | MAAPTTEPHG TLSVVEGVLE RITFANEETG YTVARVDTGH GAADLLTVVG ALLGAQPGES LRMRGRWGSH PQYGKQFMVD NYTQVLPATV AGIQKYLGSG LIKGIGPKTA EKIVGHFGVD TLTVIDETPA RLIEVPTLGP KRTKLIAAAW IEQKAIKEVM VFLQSVGVTT SISVRIYKEY GDASIDVVKQ EPYKLASDVW GIGFKTADAI AVAVGIPHDS PERVKAGIQY ALSQSSDAGN CYLPREKLLE ESVKILTVPT ELTSHCLDEL IEAEGVVAED IPDPDGYDPD EPIRAIYLVP FHRAEASLAA QLRRLLEAPD DRLASFATVD WDKALGWLKD RTGADLAPEQ TAAVQQALTA KVSVLTGGPG CGKSFTVRSI VELAQAKRAR VVLAAPTGKA AKRLTELTGA EAMTVHRLLE LKPGGDAAYD RDRPLEADLV VVDEASMLDV LLANKLVKAV APGAHLLLVG DVDQLPSVGA GEVLRDLLAA PRVPRVRLTQ VFRQAQQSGV VVNAHRINSG KPLELKGFDD FFLFVEDETE DAARVAVELA TTRIPKRFGF DPRRDIQVLT PMHRGPAGAG TLNGLLQETL TPSQPSRPEK RFGGRTFRVG DKVTQIRNNY DKGKNGVFNG TGGVITSMLL EEQTLVVHTD EDEEVTYEFA ELDELQHAYA MTVHRSQGSE YPVVVVPVTM SAWMMLQRNL LYTAVTRAKK LVVLVGSKRA LAQAIRTMSA GKRFTGLDYR LR
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