Gene Caci_6026 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_6026 
Symbol 
ID8337389 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp6945319 
End bp6947547 
Gene Length2229 bp 
Protein Length742 aa 
Translation table11 
GC content67% 
IMG OID644959130 
Producthelicase, RecD/TraA family 
Protein accessionYP_003116724 
Protein GI256395160 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR01448] helicase, putative, RecD/TraA family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.143293 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGCCGCAC CGACCACCGA GCCCCACGGC ACCCTGTCGG TCGTCGAGGG CGTGCTGGAG 
CGGATCACCT TCGCCAACGA GGAGACCGGC TACACCGTCG CGCGCGTCGA CACCGGCCAC
GGCGCCGCCG ACCTGCTGAC AGTGGTCGGC GCGCTGCTCG GCGCGCAGCC CGGCGAATCG
CTGCGGATGC GCGGCCGCTG GGGCTCGCAT CCGCAGTACG GCAAGCAGTT CATGGTCGAC
AACTACACGC AGGTCCTCCC GGCGACCGTC GCGGGCATCC AGAAGTACCT GGGCTCCGGA
CTCATCAAGG GCATCGGCCC GAAGACCGCC GAGAAGATCG TCGGCCACTT CGGCGTGGAC
ACACTCACGG TCATCGACGA GACGCCGGCC CGCCTGATCG AGGTCCCGAC CCTGGGACCG
AAGCGCACCA AGCTCATCGC GGCAGCGTGG ATCGAGCAGA AGGCCATCAA AGAGGTCATG
GTCTTCCTGC AGTCGGTCGG GGTGACCACA TCGATCTCGG TGCGGATCTA CAAGGAGTAC
GGCGACGCCT CGATCGACGT CGTGAAACAG GAGCCTTACA AGCTCGCCTC GGACGTGTGG
GGCATCGGCT TCAAGACCGC CGACGCGATC GCGGTGGCTG TCGGCATCCC GCACGACTCG
CCGGAGCGCG TAAAGGCCGG CATCCAGTAC GCGCTATCGC AGAGCTCTGA CGCTGGTAAC
TGCTATCTGC CACGCGAGAA GCTCCTGGAG GAGTCTGTCA AAATCCTGAC GGTCCCCACC
GAGCTCACCT CCCACTGCCT TGATGAACTC ATCGAGGCAG AGGGAGTCGT CGCCGAGGAC
ATCCCGGATC CCGACGGCTA CGACCCCGAC GAGCCGATTC GCGCCATCTA CCTCGTTCCC
TTCCACCGCG CCGAAGCCTC GCTGGCCGCC CAGCTACGGC GCCTGCTGGA GGCGCCGGAC
GACCGCCTCG CCTCGTTCGC CACGGTCGAC TGGGACAAGG CTCTGGGCTG GCTGAAGGAC
CGCACCGGCG CCGACCTCGC GCCGGAGCAG ACCGCGGCGG TGCAGCAGGC GCTGACGGCG
AAAGTCAGTG TCCTGACCGG CGGCCCGGGC TGCGGCAAGT CGTTCACGGT GCGCTCGATC
GTGGAGTTGG CGCAGGCCAA GCGGGCGCGC GTGGTCCTGG CCGCCCCGAC CGGCAAGGCA
GCCAAGCGCC TGACCGAGCT GACCGGCGCC GAGGCGATGA CCGTGCACCG CCTGCTGGAG
CTCAAGCCAG GCGGGGACGC CGCGTACGAC CGGGACCGGC CGCTGGAGGC CGACCTCGTG
GTGGTGGACG AAGCCTCGAT GCTGGACGTC CTGCTGGCGA ACAAACTGGT CAAGGCCGTC
GCCCCCGGCG CACACCTGTT GCTGGTCGGC GACGTGGACC AGCTCCCCTC CGTCGGCGCC
GGCGAGGTGC TGCGCGATCT CCTAGCCGCG CCCCGAGTGC CCCGCGTACG CCTGACGCAA
GTCTTCCGCC AGGCGCAACA GTCCGGCGTC GTGGTGAACG CGCACCGGAT CAACTCGGGG
AAACCGTTGG AGCTCAAGGG ATTCGACGAC TTCTTCCTGT TCGTCGAGGA CGAGACCGAG
GACGCCGCAC GCGTCGCCGT CGAGCTGGCC ACGACCCGCA TCCCCAAACG CTTCGGCTTC
GACCCCCGCC GCGACATCCA GGTTCTGACT CCCATGCACC GCGGCCCAGC CGGCGCCGGA
ACCCTCAATG GGCTCCTGCA AGAAACGCTG ACCCCCTCCC AGCCCTCGCG CCCCGAGAAG
CGCTTCGGCG GCCGCACCTT CCGCGTCGGC GACAAGGTCA CGCAGATCCG CAACAACTAC
GACAAGGGAA AGAACGGCGT CTTCAACGGC ACCGGCGGCG TCATCACCTC CATGCTCCTG
GAGGAGCAGA CCCTGGTGGT ACACACCGAC GAGGACGAAG AGGTGACGTA TGAGTTCGCG
GAGCTGGACG AGCTACAGCA CGCCTACGCC ATGACAGTGC ACCGATCGCA GGGCTCTGAA
TACCCCGTAG TTGTGGTCCC CGTGACAATG AGCGCCTGGA TGATGCTGCA ACGAAACCTG
CTCTACACGG CAGTCACGCG CGCGAAGAAG CTGGTGGTCC TGGTCGGCTC GAAACGCGCC
CTGGCACAAG CGATCCGCAC GATGTCCGCA GGCAAACGCT TCACCGGCCT GGACTACCGC
CTGCGATGA
 
Protein sequence
MAAPTTEPHG TLSVVEGVLE RITFANEETG YTVARVDTGH GAADLLTVVG ALLGAQPGES 
LRMRGRWGSH PQYGKQFMVD NYTQVLPATV AGIQKYLGSG LIKGIGPKTA EKIVGHFGVD
TLTVIDETPA RLIEVPTLGP KRTKLIAAAW IEQKAIKEVM VFLQSVGVTT SISVRIYKEY
GDASIDVVKQ EPYKLASDVW GIGFKTADAI AVAVGIPHDS PERVKAGIQY ALSQSSDAGN
CYLPREKLLE ESVKILTVPT ELTSHCLDEL IEAEGVVAED IPDPDGYDPD EPIRAIYLVP
FHRAEASLAA QLRRLLEAPD DRLASFATVD WDKALGWLKD RTGADLAPEQ TAAVQQALTA
KVSVLTGGPG CGKSFTVRSI VELAQAKRAR VVLAAPTGKA AKRLTELTGA EAMTVHRLLE
LKPGGDAAYD RDRPLEADLV VVDEASMLDV LLANKLVKAV APGAHLLLVG DVDQLPSVGA
GEVLRDLLAA PRVPRVRLTQ VFRQAQQSGV VVNAHRINSG KPLELKGFDD FFLFVEDETE
DAARVAVELA TTRIPKRFGF DPRRDIQVLT PMHRGPAGAG TLNGLLQETL TPSQPSRPEK
RFGGRTFRVG DKVTQIRNNY DKGKNGVFNG TGGVITSMLL EEQTLVVHTD EDEEVTYEFA
ELDELQHAYA MTVHRSQGSE YPVVVVPVTM SAWMMLQRNL LYTAVTRAKK LVVLVGSKRA
LAQAIRTMSA GKRFTGLDYR LR