| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6025 |
|---|
| Symbol | |
|---|
| ID | 8337388 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 6944327 |
|---|
| End bp | 6945286 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644959129 |
|---|
| Product | protein of unknown function DUF6 transmembrane |
|---|
| Protein accession | YP_003116723 |
|---|
| Protein GI | 256395159 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0697] Permeases of the drug/metabolite transporter (DMT) superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.32908 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAATC CCCGCCACAT CGCCCTGGCG CTCGCGGTCG TCGTGATCTG GGGCGTGAAC
TTCGTCGCCA TCGGCCACGC CCTGGAGGGC TTCCCGCCGA TCCTGCTCGC CGCCCTCCGC
TTCGCCCTCA CCGGCACGGC GGCCCTGTTC TTCCCTCGCC CGAAGGAGGT CCGCTGGTAC
TGGATCGCCG GTATCAGTGC CTTCATGTTC TTCGGCCAGT ACGTCCTGCT GTTCACCGCC
ATGGCGCACG GGATGCCCGA CGGCCTGGCC TCCCTGGTGC TCCAGAGCCA GGCGCCGTTC
ACTGTGCTAG CCGCCGCGCT CCTGCTCGGT GAGAAGACCG GTCCGCGCCA GGTGGCCGGG
ATCGCCGCCG CCGTCGCCGG CCTAGTCGTC ATCGGCGCCG GACGGGGCGG AAACGTCCCG
CTCAGCTCGC TGCTGCTGGC CGTCGGCGCC GGGGCGTCCT GGGCGCTGGG CTCGATCTGC
AACCGCAAGG CCGGTGCCAC CAACGGCTTC GCGCTGATGG TCTGGGCGAG CCTGTACGCC
GCTCCCCCGC TGTTCCTCAC CTCGCTGCTG TCCGAGGGCC CGCACCGGAT CGGCCACGCC
TTCGCGCACC TGCACGCCGG TCCCGTCGTG GGCCTGCTCT ACGTGGTGCT GCTGTCGACC
TTCGTCGGCA TGGGCGCCTG GGTCGTCCTG ATCACCAAGT ACCCGGCTTC GGCGGTCGCG
CCGTACACCC TCGGCGTCCC GCCGGTCGGC ATCCTCGCGG CGCTGATCGC CAACGGCGAG
CGGATGACCG CGCTGGAGAT CGCCGGCTCG CTGGTGGTAC TCGGCGGGCT GGTGGCGATC
GTCTGGCCGC GCCGGAGCGC GCGGGGCACG TCGGCGCGCC GGTTCCGCCG TCCCCGGATC
GTGCCGGATC CGTCCGTGGC CGCCGCTACA GTCGAGGAGA GCACCCACGC CGCTGCCTAG
|
|---|
| Protein sequence | MRNPRHIALA LAVVVIWGVN FVAIGHALEG FPPILLAALR FALTGTAALF FPRPKEVRWY
WIAGISAFMF FGQYVLLFTA MAHGMPDGLA SLVLQSQAPF TVLAAALLLG EKTGPRQVAG
IAAAVAGLVV IGAGRGGNVP LSSLLLAVGA GASWALGSIC NRKAGATNGF ALMVWASLYA
APPLFLTSLL SEGPHRIGHA FAHLHAGPVV GLLYVVLLST FVGMGAWVVL ITKYPASAVA
PYTLGVPPVG ILAALIANGE RMTALEIAGS LVVLGGLVAI VWPRRSARGT SARRFRRPRI
VPDPSVAAAT VEESTHAAA
|
|---|
| |