| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_5941 |
|---|
| Symbol | |
|---|
| ID | 8337303 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 6855702 |
|---|
| End bp | 6858374 |
|---|
| Gene Length | 2673 bp |
|---|
| Protein Length | 890 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644959045 |
|---|
| Product | alpha-1,2-mannosidase |
|---|
| Protein accession | YP_003116640 |
|---|
| Protein GI | 256395076 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3537] Putative alpha-1,2-mannosidase |
|---|
| TIGRFAM ID | [TIGR01180] alpha-1,2-mannosidase, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGGTT CGAACCGCAC AGGGCGCCCA CGGCGCCTCA GCTCCCTGAT ATCGGCCGGG
GCCCTGGTGG CCGCGACCGC ACTGGGCACC GCGGGGCTGT CCGCGGGTGC CGCCCACGCC
GCCGCCCCCG CCTTCGTCGC CGATCCGGCC TCCACGGTCA ACACCCTGGT GATGACCTCC
GGCGGCGGCA ACGACTTCCC CGGCGCCGAC TCCCCGTTCG GCATGGTGCA GTGGAGCCCG
GACTCCCCCA ACGGCAGCCG CAACGCCGGC GGCGGCTATG ACTACAGCGC CAACTCCACC
CGCGGGTTCT CCCTGACCCA CGTCGCCGGA CCCGGCTGCG GCGCCATGGG CGACCTGCCG
GTCCTGCCGT TCACCGGCGG GCTGCCCTCC GGCGACCCGG GTGTGCTCAC CGAATCGCTG
AACCACAGCA CCGAGACCGG AAACGCCGGC TACTACACGG TGAGCACCGG CTCGACGCCG
GTGAAGACCG AGCTGACGAC CACGGCCCAC ACCGGGATCG CCCGCTTCAC CTTCCCGGCC
ACCACGCAGG CCGACCTGCT GCTCAAGCTG CTGGACAGCC AGAACGGCAG CAGCGCCACC
GCCGCGCAGA TCGTCGGCAG CAACGAGGTC ACCGGCCAGC TCACCTCCGG CGGCTTCTGC
GGCGAGGCCG GCAGCTACAC GCTGCACTTC GACATGGTCT TCTCGCAGAA CTTCACCTCC
TCGCAGGTCA TCACCGAAAG CGGCCAGGGC AGCCCGAACT CGGTGTTCCT GAACTTCAAC
ACCAGCTCCA ACCAGACCGT CCAGGCCAAG GTCGGCATCT CCTACGTCTC GGCCGCAAAC
GCTTCCGCCA ACCTGGCCGC CGAACAGTCG GGGTTCAACT TCTCCACGGT GCAGACCGCC
GCGCACAACG CCTGGAACGC CCAGCTGAAC AAGATCCAGA TAGCCGGCGG CACCACCAGC
CAGCAGCAGC TGTTCTACAC CTCGCTCTAC CACGCGCTGC TGCACCCCAA CACGGTGACC
GACGTCAACA ACCAGTACAT GGGCTTCGAC AACGCCGTGC ACACCGCCGC CTCCGGCCAC
CCGCAGTACG ACCAGTTCTC CGGCTGGGAC GTCTACAAGG GCCAGACCCA GCTCGCCGCG
TTCGTCGATC CCTCGATCGC CTCGGACCAG GCGCAGTCGC TGGTGAACGA CTACGCCCAG
GGCGGGACGT TCCCGCAGTG GGGCTTCATG AACTTCTACA ACTGGGTCAT GGACGGTGAC
CCGGCGACCG CCGCCATCGC GAACTACTAC GCCTTCGGCG GCACGAACTT CAACACCTCC
ACCGCGCTGT CGGACATGCT GAATGAGGCC ACGACCAACA ACAACGTGCG CCGCGGGACC
TCGCTGGAGA ACACCTACGG CTACCTGCCC TCGGACCTCT ACACCGGCTC CCTGGGCTGC
TGCAACGTCC GCGACACGGC CTCCAGCCTC ATCGAGTACG ACAACGCCGA CTTCGCGCTG
TCCCGCTTCG CCTCCTCCAT GGGCGACTCG GCCAACGCGA CCAAGTTCAA CGCCCGGGCC
AACAACTGGA AGCACATCTT CAACCCGGCC AACCAGCTGC TGAACCCCGA GTCGAGCAAC
GGCAGCTTCG ACAGCATCAC CACCGGGAGC ACGACCGGCT TCACCGAGTC CACCGCCGCG
CAGAACCGCT TCGACGTCGG CTTCGACCAG GCCGGTCTGG CCGCGCTCTA CGGCGGCAAC
AGCGCGATCA ACTCGGCGCT GGACTACTAC TTCCAGTCCT TCAACAGCAG CCACTCCGAC
CAGTCGTTCC TGTCCAACGA GGTGGACCTG GGCACCCCCT GGTTCTACGA CTGGACCGGC
GAGCCCTCGC ACACCCAGTC GGTCGTGAAC CGCATGCTCA ACCAGCTCTA CCAGGACACC
CCGGCCGGCT TCCCGAACAA CGACGACCTG GGCACCATGT CCTCGCAGTA CGTCTGGGGC
GCCCTGGGCA TGTACCCGGT GACCCCGGGC AGCGCGGACC TGGCGCTGAA CAGCCCGCTG
TTCACGCAGG CGGTCGTCCA CCTGGACTCC GGCTCGACCA TCACGATCAA CGCCCCGGCC
GCCTCGGCGA GCAACTACTA CATCCAGTCG CTCACCGTGA ACGGCACCGC GAGCACCCAC
ACCTGGCTGC CGGCCTCGAC CTGGAAGTCC GGCGCCACGC TGAACTTCAC CCTCGGCTCC
TCGGCGTCCA GCTGGGGCAC CGCGGCCGGC GACGCGCCGC CGTCCTACGA CCAGAGCAGC
GCCGGCGGCG CCGTCGGGCC GCTGACGTCG GGCATCGCGG GCAAGTGCGC GGACGACGAC
CACCGCGGCA CCGCCAACGG GACCAAGATC CAGCTGTGGA GCTGCAACGG TTCGGTGGCG
CAGCAGTTCA CCGCCAACGC CAACGGCAGC CTGGGCATCA TGGGCGGCTG CCTGGACGTG
ACCAGCGGCG GGAGCGCGGA CGGCACGCTG GTGCAGCTGT ACACGTGCAA CAACACCGGA
TCCCAGGTGT GGCAGCAGCA ATCCAACGGC TCGCTGGTGA ACCCGCAGTC CGGCAAGTGC
CTGGACGACC CGGGCAGCAG CACCACCGAC GGCACGCAGT TGCAGATCTA CACCTGCAAC
GGCTCCAACG CCCAGAAGTG GACGATTCCG TAG
|
|---|
| Protein sequence | MTGSNRTGRP RRLSSLISAG ALVAATALGT AGLSAGAAHA AAPAFVADPA STVNTLVMTS
GGGNDFPGAD SPFGMVQWSP DSPNGSRNAG GGYDYSANST RGFSLTHVAG PGCGAMGDLP
VLPFTGGLPS GDPGVLTESL NHSTETGNAG YYTVSTGSTP VKTELTTTAH TGIARFTFPA
TTQADLLLKL LDSQNGSSAT AAQIVGSNEV TGQLTSGGFC GEAGSYTLHF DMVFSQNFTS
SQVITESGQG SPNSVFLNFN TSSNQTVQAK VGISYVSAAN ASANLAAEQS GFNFSTVQTA
AHNAWNAQLN KIQIAGGTTS QQQLFYTSLY HALLHPNTVT DVNNQYMGFD NAVHTAASGH
PQYDQFSGWD VYKGQTQLAA FVDPSIASDQ AQSLVNDYAQ GGTFPQWGFM NFYNWVMDGD
PATAAIANYY AFGGTNFNTS TALSDMLNEA TTNNNVRRGT SLENTYGYLP SDLYTGSLGC
CNVRDTASSL IEYDNADFAL SRFASSMGDS ANATKFNARA NNWKHIFNPA NQLLNPESSN
GSFDSITTGS TTGFTESTAA QNRFDVGFDQ AGLAALYGGN SAINSALDYY FQSFNSSHSD
QSFLSNEVDL GTPWFYDWTG EPSHTQSVVN RMLNQLYQDT PAGFPNNDDL GTMSSQYVWG
ALGMYPVTPG SADLALNSPL FTQAVVHLDS GSTITINAPA ASASNYYIQS LTVNGTASTH
TWLPASTWKS GATLNFTLGS SASSWGTAAG DAPPSYDQSS AGGAVGPLTS GIAGKCADDD
HRGTANGTKI QLWSCNGSVA QQFTANANGS LGIMGGCLDV TSGGSADGTL VQLYTCNNTG
SQVWQQQSNG SLVNPQSGKC LDDPGSSTTD GTQLQIYTCN GSNAQKWTIP
|
|---|
| |