Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_5936 |
Symbol | |
ID | 8337298 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 6848846 |
End bp | 6850579 |
Gene Length | 1734 bp |
Protein Length | 577 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644959040 |
Product | ABC transporter related |
Protein accession | YP_003116635 |
Protein GI | 256395071 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.960188 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.0915983 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTATCA AAATCCTGAG ACAATACCTG CGACCGTACA AAGGACCGAT CTATCTGGTC CTGGCGCTGC AGTTCGTGCA GACGCTGTGC GCGTTGTACC TGCCCACGCT CAACGCCGAC ATCATCGACG ACGGCGTGGT CAAGGGCGAC ACCGGATACG TCATCAAGAC CGGCGCCCTG ATGCTGGTCT TCTCGCTGCT GCAGATCGCC TGCTCGGTCG GCGCCGTCTA CTTCGGCGCC CGGACCGCGA CGGCGCTGGG CCGGGACCTG CGGGCCGGCA TCTTCGACCG GGTCCAGGCC TTCTCCACCC GCGAGGTCGG CCGCTTCGGC GCGCCCTCGC TGCTCACCCG CACCACCAAC GACGTGCTGC AGGTGCAGAT GGTGGTCCTG ATGACCTTCA CCATGGCCGC CGCCGCGCCG GTGATGCTGG TCGGCGGCGT CATCCTGGCG CTGCGCCAGG ACGTGCCGCT GTCCGGGCTG CTGGTCGCGA TCATCCCGGC GCTGGCCATC GCGATCGGGA TCATCATCAG CCGCATGGGC CCGCTGTTCC GGATCGTGCA GGTCCGCATC GACAAGATCA ACGGTGTGAT GCGCGAGCAG ATCACCGGTA TCCGCGTCAT CCGTGCCTTC GTCAAGGACG AGCACGAGAA CCAGCGCTAC GGCCGGGCCA ACGAGGAGCT GCTGGACGTC TCGCTGCGCG TGGGCAAGCT GATGGCGCTG ATGTTCCCGG TCGTGATGAC GATCGTGAAC TTCGCCAGCG TCGGCGTGCT GTGGTTCGGC GCGCACCGCA TCGACTCCGG CGGGATGCAG ATCGGGTCGC TGACGGCGTT CCTGAGCTAC CTGATGCAGA TCCTGATGTC GGTCATGATG ACCACGTTCA TGTTCATGAT GGTTCCCCGG GCCGCGGTCT GCGCCGACCG CATCGGCGAG GTGCTGGAGA CCGAGTCCAG CGTCGTCCCG CCGGTCGTGG CGCTGGTGCC GCAGACCTCC GGCACGCTGG AGTTGCGCGG CGCGAGCTTC AAGTACCCCG GCGCCGAGGA CTGCGTGCTG AACGAGGTGT CGCTGACCGC GCGGCCCGGG GAGACCACCG CGATCATCGG CTCCACCGGC GCGGGCAAGA CCACGCTGCT GAACCTGGTG CCCCGGCTGG CCGACGTCAC CGACGGCGCG GTGCTGGTCG ACGGTGTGGA CGTGCGCCAG CTCGATCCCC AGCGGCTGAC CGAGACGGTG GCCATCGTGC CGCAGAAGCC GTATCTGTTC ACCGGCACCA TCGCCTCCAA CCTGCGCTAC GGCCGGCCCG ACGCCTCCGA TGAGGAACTG TGGGAGGCGC TGGAGACCGC GCAGGCGCGG GACTTCGTCG AGCGCATGCC CGAGGGCCTG AACGCCCCGA TCGCCCAGGG CGGGACCAAC GTCTCCGGCG GCCAGCGGCA GCGCCTGGCG ATCGCCCGCG CGCTGGTGCA CAAGCCGGAG ATCTTCCTGT TCGACGACTC GTTCTCGGCC CTGGACTACA GCACCGACGC CCGGCTGCGC GCCGCGCTGG TGGACCAGAC CCGGGAGTCC ACGGTGGTCA TCGTCGCGCA GCGCGTCTCC ACGATCCGCA CCGCGGACCG CATCATCGTC CTGGACCGGG GCGTGGTGGT CGGGTCCGGG ACCCACAGCG AGCTGATGGA ATCCAACGAG ACCTACCGGG AGATCGTGCT CTCGCAGCTC ACCGAAGAGG AGGCCGCGGC ATGA
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Protein sequence | MLIKILRQYL RPYKGPIYLV LALQFVQTLC ALYLPTLNAD IIDDGVVKGD TGYVIKTGAL MLVFSLLQIA CSVGAVYFGA RTATALGRDL RAGIFDRVQA FSTREVGRFG APSLLTRTTN DVLQVQMVVL MTFTMAAAAP VMLVGGVILA LRQDVPLSGL LVAIIPALAI AIGIIISRMG PLFRIVQVRI DKINGVMREQ ITGIRVIRAF VKDEHENQRY GRANEELLDV SLRVGKLMAL MFPVVMTIVN FASVGVLWFG AHRIDSGGMQ IGSLTAFLSY LMQILMSVMM TTFMFMMVPR AAVCADRIGE VLETESSVVP PVVALVPQTS GTLELRGASF KYPGAEDCVL NEVSLTARPG ETTAIIGSTG AGKTTLLNLV PRLADVTDGA VLVDGVDVRQ LDPQRLTETV AIVPQKPYLF TGTIASNLRY GRPDASDEEL WEALETAQAR DFVERMPEGL NAPIAQGGTN VSGGQRQRLA IARALVHKPE IFLFDDSFSA LDYSTDARLR AALVDQTRES TVVIVAQRVS TIRTADRIIV LDRGVVVGSG THSELMESNE TYREIVLSQL TEEEAAA
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