Gene Caci_5936 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5936 
Symbol 
ID8337298 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp6848846 
End bp6850579 
Gene Length1734 bp 
Protein Length577 aa 
Translation table11 
GC content68% 
IMG OID644959040 
ProductABC transporter related 
Protein accessionYP_003116635 
Protein GI256395071 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.960188 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0915983 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTATCA AAATCCTGAG ACAATACCTG CGACCGTACA AAGGACCGAT CTATCTGGTC 
CTGGCGCTGC AGTTCGTGCA GACGCTGTGC GCGTTGTACC TGCCCACGCT CAACGCCGAC
ATCATCGACG ACGGCGTGGT CAAGGGCGAC ACCGGATACG TCATCAAGAC CGGCGCCCTG
ATGCTGGTCT TCTCGCTGCT GCAGATCGCC TGCTCGGTCG GCGCCGTCTA CTTCGGCGCC
CGGACCGCGA CGGCGCTGGG CCGGGACCTG CGGGCCGGCA TCTTCGACCG GGTCCAGGCC
TTCTCCACCC GCGAGGTCGG CCGCTTCGGC GCGCCCTCGC TGCTCACCCG CACCACCAAC
GACGTGCTGC AGGTGCAGAT GGTGGTCCTG ATGACCTTCA CCATGGCCGC CGCCGCGCCG
GTGATGCTGG TCGGCGGCGT CATCCTGGCG CTGCGCCAGG ACGTGCCGCT GTCCGGGCTG
CTGGTCGCGA TCATCCCGGC GCTGGCCATC GCGATCGGGA TCATCATCAG CCGCATGGGC
CCGCTGTTCC GGATCGTGCA GGTCCGCATC GACAAGATCA ACGGTGTGAT GCGCGAGCAG
ATCACCGGTA TCCGCGTCAT CCGTGCCTTC GTCAAGGACG AGCACGAGAA CCAGCGCTAC
GGCCGGGCCA ACGAGGAGCT GCTGGACGTC TCGCTGCGCG TGGGCAAGCT GATGGCGCTG
ATGTTCCCGG TCGTGATGAC GATCGTGAAC TTCGCCAGCG TCGGCGTGCT GTGGTTCGGC
GCGCACCGCA TCGACTCCGG CGGGATGCAG ATCGGGTCGC TGACGGCGTT CCTGAGCTAC
CTGATGCAGA TCCTGATGTC GGTCATGATG ACCACGTTCA TGTTCATGAT GGTTCCCCGG
GCCGCGGTCT GCGCCGACCG CATCGGCGAG GTGCTGGAGA CCGAGTCCAG CGTCGTCCCG
CCGGTCGTGG CGCTGGTGCC GCAGACCTCC GGCACGCTGG AGTTGCGCGG CGCGAGCTTC
AAGTACCCCG GCGCCGAGGA CTGCGTGCTG AACGAGGTGT CGCTGACCGC GCGGCCCGGG
GAGACCACCG CGATCATCGG CTCCACCGGC GCGGGCAAGA CCACGCTGCT GAACCTGGTG
CCCCGGCTGG CCGACGTCAC CGACGGCGCG GTGCTGGTCG ACGGTGTGGA CGTGCGCCAG
CTCGATCCCC AGCGGCTGAC CGAGACGGTG GCCATCGTGC CGCAGAAGCC GTATCTGTTC
ACCGGCACCA TCGCCTCCAA CCTGCGCTAC GGCCGGCCCG ACGCCTCCGA TGAGGAACTG
TGGGAGGCGC TGGAGACCGC GCAGGCGCGG GACTTCGTCG AGCGCATGCC CGAGGGCCTG
AACGCCCCGA TCGCCCAGGG CGGGACCAAC GTCTCCGGCG GCCAGCGGCA GCGCCTGGCG
ATCGCCCGCG CGCTGGTGCA CAAGCCGGAG ATCTTCCTGT TCGACGACTC GTTCTCGGCC
CTGGACTACA GCACCGACGC CCGGCTGCGC GCCGCGCTGG TGGACCAGAC CCGGGAGTCC
ACGGTGGTCA TCGTCGCGCA GCGCGTCTCC ACGATCCGCA CCGCGGACCG CATCATCGTC
CTGGACCGGG GCGTGGTGGT CGGGTCCGGG ACCCACAGCG AGCTGATGGA ATCCAACGAG
ACCTACCGGG AGATCGTGCT CTCGCAGCTC ACCGAAGAGG AGGCCGCGGC ATGA
 
Protein sequence
MLIKILRQYL RPYKGPIYLV LALQFVQTLC ALYLPTLNAD IIDDGVVKGD TGYVIKTGAL 
MLVFSLLQIA CSVGAVYFGA RTATALGRDL RAGIFDRVQA FSTREVGRFG APSLLTRTTN
DVLQVQMVVL MTFTMAAAAP VMLVGGVILA LRQDVPLSGL LVAIIPALAI AIGIIISRMG
PLFRIVQVRI DKINGVMREQ ITGIRVIRAF VKDEHENQRY GRANEELLDV SLRVGKLMAL
MFPVVMTIVN FASVGVLWFG AHRIDSGGMQ IGSLTAFLSY LMQILMSVMM TTFMFMMVPR
AAVCADRIGE VLETESSVVP PVVALVPQTS GTLELRGASF KYPGAEDCVL NEVSLTARPG
ETTAIIGSTG AGKTTLLNLV PRLADVTDGA VLVDGVDVRQ LDPQRLTETV AIVPQKPYLF
TGTIASNLRY GRPDASDEEL WEALETAQAR DFVERMPEGL NAPIAQGGTN VSGGQRQRLA
IARALVHKPE IFLFDDSFSA LDYSTDARLR AALVDQTRES TVVIVAQRVS TIRTADRIIV
LDRGVVVGSG THSELMESNE TYREIVLSQL TEEEAAA