Gene Caci_5876 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5876 
Symbol 
ID8337237 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp6783688 
End bp6784680 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content73% 
IMG OID644958980 
ProductABC transporter related 
Protein accessionYP_003116575 
Protein GI256395011 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.145407 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACCCA GGACCGCCGC TCCACCGCCC GCCATAGCGG TCCAGGACCT GCGCAAGCGC 
TTCGGAACCA CCGCGGCCCT CGACGGGATG TCCTTCGACG TCGCCGCCGG CAAGGTCACC
GGCTTCGTCG GTCCGAACGG CGCGGGCAAG AGCACGACCA TGCGCGTCGT CCTCGGCCTC
GACACGCCCG ACGAGGGACA GGCGCTGATC GGCGGCGTCC CCTACGCCAA GCTGCGCCGA
CCGCTCGGCC ACATCGGCGC CCTGCTCGAC GCCGCCGCGC TCCAGCCCGG CCGCAGCGCG
CGCAACCACC TGCTGTGGCT CGCGCACTCC CAAGGCCTGG GCACCAAGCG GGTCGACGAG
GTCGTCGAGC AATCGGGCCT GGGCGAGGCG ATCCGGCGCA AGGCCGGCGG CTACTCCCTC
GGGATGCGCC AGCGCCTCGG CATCGCCGCG GCGATGCTCG GCGATCCGCC GGTGGTGATG
CTCGACGAGC CCTTCAACGG CCTGGACCCC GAGGGCATCG TCTGGATCCG CGGCTACCTG
AAGGCGCTCG CCGCCGAAGG GCGCGCCGTC CTGGTCTCCA GCCACCTGAT GAGCGAGTTG
GAAGGCTGCG CCGACCACCT GGTCGTCGCC GGACGCGGCA AGGTCATCGC CGACACCGGC
GTCGCCGAGC TGATCGCGCG CTCCTCCGGA GGACGCGTGG TGCTGCGGAC CTCGGCGCGC
GCCGAAGCCA CGACCGCGCT GGCGAACGCC GGCGGGACCG TCGCGGTCAC CGGACCGGAC
CAGCTGACCG TGGACGGAGT CGCCGCCGAG AACGTGGTCA GGCTCCTGAA CTCCGGCGGC
GTGCCGTTCG CCGAGGTCTC GGCACACCGT GCCTCGTTGG AGGAGGCGTA CATGGACCTC
ACCCGCGACT CGGTCGAGTT CCGCGCAGCG ACCGCAGCGA CCTCCACCGC CACCACCGCC
GGGATCGACG GAACCGACGG AGGAGCAGCA TGA
 
Protein sequence
MTPRTAAPPP AIAVQDLRKR FGTTAALDGM SFDVAAGKVT GFVGPNGAGK STTMRVVLGL 
DTPDEGQALI GGVPYAKLRR PLGHIGALLD AAALQPGRSA RNHLLWLAHS QGLGTKRVDE
VVEQSGLGEA IRRKAGGYSL GMRQRLGIAA AMLGDPPVVM LDEPFNGLDP EGIVWIRGYL
KALAAEGRAV LVSSHLMSEL EGCADHLVVA GRGKVIADTG VAELIARSSG GRVVLRTSAR
AEATTALANA GGTVAVTGPD QLTVDGVAAE NVVRLLNSGG VPFAEVSAHR ASLEEAYMDL
TRDSVEFRAA TAATSTATTA GIDGTDGGAA