| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_5820 |
|---|
| Symbol | ligC |
|---|
| ID | 8337181 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 6723897 |
|---|
| End bp | 6724973 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644958924 |
|---|
| Product | ATP-dependent DNA ligase |
|---|
| Protein accession | YP_003116519 |
|---|
| Protein GI | 256394955 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.846497 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCGG TCCGGCCGAT GCTGGCGACC GCCGTGCGAG ACGTCCCCCG CTCCCCCGGG
CTGGCCTACG AGCCGAAGTG GGACGGGTTC CGCTGCGTGG TGTTCCGCGA CGGCGCCGAG
GTCGAGCTGG GCTCGCGCAA CGACCGGCCG CTGACCAGGT ACTTCCCGGA GCTGGTCGAG
CTGCTGCTGG CCGCGTTGCC GCAGCGGTGC GTCGTGGACG GGGAGATCGT CGTCGTCACC
GACGACGGTC TGGACTTCGA CACGCTCCAG AACCGCCTGC ATCCGGCTGC CTCCCGGGTC
CGGAAGCTCG CGGTCGAGAC GCCGGCCAGC TTCGTCGCCT TCGATCTGCT GGCGCTCGGC
GACCGCGACC TGAGCGGCGA GCCCTTCGGC GAGCGCCGCC GCGTGCTCGC CGAGGCGCTG
GAGGGCAGCA GCGGCGACAC CGGGAACAGC AGGGTGATCC TGACTCCCTT CACCGAGGAC
CCCGACACGG CGCAGGACTG GTTCACCCGC TTCGAGGGCG CGGGTTTCGA CGGCGTCATG
GCCAAGCCGC TGGCTCTTCC GTATGAGCAG AACAAGCGGG TCATGTTCAA GGTGAAGCAC
GAGCGGACCG CAGACTGCGT CGTGGCGGGG TTCCGTTGGC ACAAGGACGG CGAGGGCGTC
GGCTCGCTGC TGCTGGGTCT GTTCGATGAT GAAGGCGTCT TGCACCACGT CGGCGTGGCC
AGCAGTTTCA CCGCCGCTCG GCGTCGTGAG CTGGTCGGTG AGCTGGCTCC GCTGCGCGAG
AACACCCTGG ACGACCATCC CTGGCGCGGC TGGGCTGAAG CGCAGGAGCA GGCCGGCGGC
CGCATGCCTG GCGCCCGCAG CCGGTGGTCC GCCGACAAGG ACTTGGCGTG GGAGCCTTTG
CGGCCCGAGC TTGTCGCCGA GGTCCGGTAC GAGCATCTGT TGTCCGGCCG GTTCCGGCAC
GGCGGGCGGC TGGTGCGCTT CCGCCCGGAC CGCACGCCGG AGTCGTGCAC GTATGCCCAG
CTGGAGCAGG TAGCGCCGGC TGAGCTGGCC GAGGTGTTCG GGACGGCCGG GTCATGA
|
|---|
| Protein sequence | MPPVRPMLAT AVRDVPRSPG LAYEPKWDGF RCVVFRDGAE VELGSRNDRP LTRYFPELVE
LLLAALPQRC VVDGEIVVVT DDGLDFDTLQ NRLHPAASRV RKLAVETPAS FVAFDLLALG
DRDLSGEPFG ERRRVLAEAL EGSSGDTGNS RVILTPFTED PDTAQDWFTR FEGAGFDGVM
AKPLALPYEQ NKRVMFKVKH ERTADCVVAG FRWHKDGEGV GSLLLGLFDD EGVLHHVGVA
SSFTAARRRE LVGELAPLRE NTLDDHPWRG WAEAQEQAGG RMPGARSRWS ADKDLAWEPL
RPELVAEVRY EHLLSGRFRH GGRLVRFRPD RTPESCTYAQ LEQVAPAELA EVFGTAGS
|
|---|
| |