Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_5811 |
Symbol | |
ID | 8337172 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 6717694 |
End bp | 6718362 |
Gene Length | 669 bp |
Protein Length | 222 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644958915 |
Product | transcriptional regulator, TetR family |
Protein accession | YP_003116510 |
Protein GI | 256394946 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.78864 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCATCC CCGCGACGAA CTCCGCGACG AACTCCGCGA CGAATCCCCC GACGAACCCC CCGCCGAACG CCGCGACACC GGCCCGCCCG CTGCGCGCCG ACGCCGCGCG CAACCGCGCG CTGCTGCTCG CGGCGGCCGC CGACGAGTTC GCCGAGCACG GGATGGAGGC CTCGGTCGCG GACATCGCGC GCCGAGCGGG CGTCGGCAAG GGGACGGTGT TCCGACACTT CCCGACCAAA GACGACCTGA TCGCCGCCAT CGTCCTGGAC CGTGTCGAGG ACCTGCGCAC GATCGGCGAA CGCCTGCTCA CCGCAGAGGA TCCGGGCGCG GCGCTGCTGG AGTTCCTCAT CGCCGCCGGC CATCAGCGGC AGCAGCGGGA CCTGTCGTTC CTGGTGACCG CCGGGGAGCT GAAACCCGAA GCACAGCAAG CCCAAGCAGC GCTGTTCGGC ACCATCGAGG ATCTGGTCAC CCGGGCCCGG GAGCACGGCG CGGTCCGTGC CGACGTCACC GGTACCGACG TCTTCCTGCT GATGTGCGCG CCGAACTACG TCAGCGGCTA CGTCCCGAAC GCCGACCCGG ACCTGTGGCG CCGCTACCTG GCGATCATCT TCGACGGGCT GCGGCCCGAA GGCGCGCACG CATTGCCGCA GCCCGCTCCG ACGCTCTGA
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Protein sequence | MTIPATNSAT NSATNPPTNP PPNAATPARP LRADAARNRA LLLAAAADEF AEHGMEASVA DIARRAGVGK GTVFRHFPTK DDLIAAIVLD RVEDLRTIGE RLLTAEDPGA ALLEFLIAAG HQRQQRDLSF LVTAGELKPE AQQAQAALFG TIEDLVTRAR EHGAVRADVT GTDVFLLMCA PNYVSGYVPN ADPDLWRRYL AIIFDGLRPE GAHALPQPAP TL
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