Gene Caci_5800 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5800 
Symbol 
ID8337161 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp6702019 
End bp6702987 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content70% 
IMG OID644958904 
Productprotein of unknown function DUF6 transmembrane 
Protein accessionYP_003116499 
Protein GI256394935 
COG category[R] General function prediction only 
COG ID[COG5006] Predicted permease, DMT superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.33827 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACAATC CACCAATGGC CACCCCGAGC GTCGAGACGA CCGAGCACAG CACGTCCGGT 
GCCGGTGCCC GTGCCGGTTC CGGCCCGACC GCGATGGCCA GCCGGGCGCT CGGCGCGATC
CCGCCGACGA TGCTGGTGCT GCTGGACATC CTCAGCGCTC AGCTGGGTTC GGCGCTCGCC
AAGCACCTGT TCGGCGCCGT CGGCAGCTTC GGGGCGGTGG CGCTGCGGCT GTTCTTCGCC
TCGACGGTTT TGTTGCTCTT CTGGCGTCCG TCGCTGCGCC TGGAGCGCCG GACCTGGATG
GTGGTGCTCG GCTACGGCAT CGTCCTGGGC TCGATGAACC TGTGCTTCTA CCAGTCGCTG
GCACGCATCC CACTGGGCGT CGCGGTGACC ACCGAGTTCC TGGGACCGCT GGCGGTGGCC
GCGGCCGGGT CGCGGCGGTG GCTAGACGCG CTGTGGGCGC TGCTCGCCGG GGGCGGAGTG
CTGCTGCTGA CGGAAGGGGG CGGCGCGCTG GACCTCGTCG GCGTTCTGTT CGCCCTCGCG
GCGGGCACGT TCTGGGGTCT CTACATCCTC ATGGGCGCCG CCCTCGGACG CCACACCACC
GAAGGCGACG GTCTGGCGCT GGGCATGGCC GTCGCGGCGC TGATGACCGT GCCGTTCGGC
GTCGCCGAGA GCGGCACGGC GGTGCTGCGG CCGTGGGTGC TGCTGTTGGG ACTCGGCGTT
GCGCTGTTGT CCTCGGTGCT GCCCTACACA CTGGATCTGG AGGCGCTGCG CAAGATGCCG
CCGCGTGTGT TCGGGATTCT GATGAGCCTG GAGCCGGCGG TGGCGGCGCT CATCGGGCTG
GTCGTGCTCG GGGAGTCGCT GGGGTGGTCG CAGTGGCTCG CGATTCTGTT CGTGGTCGCG
GCGTCGGTCG GGGCGACCCG TGGCACGCAG TCGAGCGAAG TAACTACGAG CCCTGAAATG
GTCGGCTAG
 
Protein sequence
MHNPPMATPS VETTEHSTSG AGARAGSGPT AMASRALGAI PPTMLVLLDI LSAQLGSALA 
KHLFGAVGSF GAVALRLFFA STVLLLFWRP SLRLERRTWM VVLGYGIVLG SMNLCFYQSL
ARIPLGVAVT TEFLGPLAVA AAGSRRWLDA LWALLAGGGV LLLTEGGGAL DLVGVLFALA
AGTFWGLYIL MGAALGRHTT EGDGLALGMA VAALMTVPFG VAESGTAVLR PWVLLLGLGV
ALLSSVLPYT LDLEALRKMP PRVFGILMSL EPAVAALIGL VVLGESLGWS QWLAILFVVA
ASVGATRGTQ SSEVTTSPEM VG