| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_5702 |
|---|
| Symbol | |
|---|
| ID | 8337063 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 6578406 |
|---|
| End bp | 6583058 |
|---|
| Gene Length | 4653 bp |
|---|
| Protein Length | 1550 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644958806 |
|---|
| Product | Glutamate synthase (ferredoxin) |
|---|
| Protein accession | YP_003116401 |
|---|
| Protein GI | 256394837 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0069] Glutamate synthase domain 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTCC CAGCCATACC GCCCGGTCGC CCCGGATCCT CCCGCCCCGA AGCCCAGGCG
GCGGCCCAGG CCGCTGCCGC CTCCACCAGC GCCGCCCCGC TGTTCTCGGC GCTGCCCGAG
GCGCAGGGCC TGTACGACCC GCGCGCGGAG AAGGACTCCT GCGGCGTGGC CTTCGTGGCG
ACGCTGACCG GGATCGCCAG CCACGGGATC GTCGACCAGG CGCTCCAGGC GCTGGTCAAC
ATGGAACACC GCGGCGCCTC CGGTGCCGAG CCCTCGACCG GCGACGGCGC CGGCATCCTG
GTGCAGGTCC CCGACGCCTT CCTGCGCGCC GTGCTCAGCG AGAGCGGCGC GCGTTTCGAC
CTGCCGCCGG CCGGGCACTA CGCCGTCGGA GTGGCCTTCC TCCCCACCGA CGACGACGCC
GCGCGGGAGG CGGAGATCCG CGTCGAGGCC ATCGCCGCCG AGGAGCACCT GGCCGTGCTC
GGCTGGCGCG AGCTGCCCAC GAACCCCGAA GGGCTGGGCA ACGGCGCGCT GTCGGTCATG
CCCCGCTTCC GGCAGCTGTT CGTCACCGGC ACCGGCGGCC AGAGCGGTAT CGAGCTGGAC
CGCCTGGCCT TCGCCCTGCG CAAGCGCGCC GAGCGCGACG CCCAGGTCTA CTTCCCGAGC
CTGAGCGCGC GCACCCTGGT CTACAAGGGC ATGCTCACCA CCGCGCAGCT GGAGACCTTC
TTCCCGGACC TGCTCGACGA GCGCTTCGCC AGCGCCATCG GCCTGGTGCA CTCGCGCTTC
AGCACCAACA CCTTCCCGGC GTGGCCGCTG GCGCACCCCT ACCGGTTCGT CGCGCACAAC
GGCGAGATCA ACACGGTCAT CGGGAACCGG AACTGGATGC GCGCCCGCGA GTCCGACCTG
GCGACCGACC TCATCGGCGG CGACCTGGAC CGGCTGTTCC CGATCTGCAC CCCCGGCGCC
TCGGACTCCG CCTCCTTCGA CGAGGCCCTG GAGCTGCTGC ACCTGGGCGG GCGCAGCCTG
CCGCACGCCG TGCTGATGAT GATCCCCGAG GCCTGGGAGA ACCACGGCGA GATGGACGCC
GCCCGGCGCG CCTTCTACGC CTACCACTCC TCCTTCATGG AGCCCTGGGA CGGCCCGGCC
GACATGGTCT TCTCCGACGG CACGCTGATC GGCGCCGTCC TGGACCGCAA CGGCCTGCGC
CCCTCCCGCT ACTGGGTCAC CGACGACGGC CTGGTGGTCC TGGCCAGCGA GTTCGGCGTC
CTGGACATCG ACCCGGCGAC CGTGGTCCGC AAGGGCCGGC TGCAGCCCGG CCGGATGTTC
CTGGTGGACA CCGCGGCCGG CCGGATCGTC GAGGACGAGG AGATCAAGGC CGCCCTGGCC
GCCGCCGAGC CGTACGCCGA GTGGCTGCAC GCCGGCCGGA TCAAGCTCGA CAAGCTCCCC
GAGCGCGAGC ACATCGTGCA CACCCGCGCC TCGGTCACGC GCCGCCAGCA GACCTTCGGC
TACACCGAGG AGGAACTGCG GGTCCTGCTC GCCCCGATGG CGCGCACCGG CGGCGAGCCG
CTGGGCTCCA TGGGCTCGGA CACCCCGATC GCGGTGCTCT CCGAGAAGCC GCGCCTGGTC
TTCGAGTACT TCAGCCAGCT GTTCGCGCAG GTCACCAACC CGCCGCTGGA CGCCATCCGC
GAAGAGCTGG TCACGAGCCT TGCGACCACC ATCGGTCCGG AGACCAACCT GCTGGACCCG
ACCGCCGCGG CCTGCCGCCA GGTCGAGGTG GCCTTCCCGG TCATCGACAA CGACGAGCTG
GCCAAGCTCA TCCACATCAA CGCCGACGGC GACCTGCCGG GGCTGCGCGC GGTCACCGTC
TCAGGGCTCT ACCGGGTCGC CGGCGGGGGA CCCGCGCTGC GGGCCCGCCT GGAGGAGATC
CGCGAGGAGG TCTCCAAGGC CATCGCCGGC GGCGCGCGCA TCATCGTGCT CTCCGACCGC
CACTCCGACG CCGAGCACGC CCCGATCCCC TCGCTGCTGC TCACCTCCGC GGTGCACCAC
CACCTGATCC GCGAGAAGAC CCGCACCCAC GTCGGCCTGG TCATCGAGGC CGGCGACGTG
CGCGAGGTGC ACCACGTCGC GCTGCTGATC GGCTACGGCG CCGCGGTGGT CAACCCCTAC
CTGGCGATGG AGTCCGTCGA GGAGATGGCG GGCTCGGGCC ACCTCGGCCT GATCGAGCCC
GACCAGGCCA TCAGGAACCT GATCAAGGCC CTGGGCAAGG GCGTGCTGAA GGTGATGTCC
AAGATGGGCA TCTCCACCGT CGCCTCCTAC CGCGGCGCGC AGATCTTCGA GGCCGTGGGC
CTGGCGCAGG ACGTCGTCGA CGAGTACTTC ACCGGCACCA CCAGCAAGCT CGGCGGGGTC
GGGCTGGAGA CCCTGGCCGA GGAGACCGCG CGCCGGCACG CCCGCGCCTA CCCCAAGCAG
TCCGGCACCT CCCGTCTGGC GCACCGCCGG CTGGAGATCG GCGGGGAGTA CCAGTGGCGC
CGCGAGGGCG AGCCGCACCT GTTCGACCCG GACACGGTCT TCCGCCTGCA GCACTCCACC
CGCGAGAAGC GCTACGACAT CTTCAAGCAG TACACCTCGC GCGTGGACGA GCAGTCCGAG
CGCCTGATGA CGCTGCGCGG GCTGTTCAAG TTCAAGGACG GCGCGCGGGC GCCGATCCCG
ATCGAAGAGG TCGAACCGAT CTCCGACATC GTCAAGCGCT TCTCCACCGG CGCCATGTCC
TACGGCTCCA TCTCCGCCGA GGCGCACCAG ACGCTGGCCA TCGCGATGAA CCAGCTCGGC
GCCAAGTCCA ACACCGGCGA GGGCGGCGAG GACGTCGACC GCCTACGCGA CCCGGAGCGC
CGCAGTTCGA TCAAGCAGGT CGCCTCCGGC CGGTTCGGCG TCACCGCCGA GTACCTGGCC
GAGGCCGACG ACATCCAGAT CAAGATGGCC CAGGGCGCCA AGCCCGGCGA GGGCGGCCAG
TTGCCCGGAC ACAAGGTGTA CCCGTGGGTG GCCAAGACCC GGCACTCCAC GCCCGGCGTC
GGCCTGATCT CCCCGCCGCC GCACCACGAC ATCTACTCGA TCGAGGACCT CGCGCAGCTG
ATCCACGACC TGAAGAACGC CAACCGCGAC GCGCGCGTGC ACGTCAAGCT GGTCGCCGAG
GTCGGCGTCG GCACGGTGGC CGCGGGCGTG TCCAAGGCGC ACGCCGACGT GGTGCTCATC
TCCGGCCACG ACGGCGGGAC CGGCGCCTCG CCGCTGACCT CGCTGAAGCA CGCCGGCGCG
CCCTGGGAGC TGGGCTTGGC CGAGACCCAG CAGACGCTGC TGCTCAACGG CCTGCGCGAC
CGCATCGTGG TGCAGACCGA CGGCCAGCTC AAGACCGGCC GCGACGTGCT GATCGCGGCG
CTGCTCGGCG CCGAGGAGTA CGGCTTCGCC ACCGCGCCGC TGGTCGTCTC CGGCTGCGTC
ATGATGCGCG TGTGCCACCT GGACACCTGC CCGGTCGGCG TCGCGACGCA GAACCCCGAG
CTGCGCGCCC GTTTCAACGG CCGGCCGGAG TTCGTGGTCA CCTTCTTCGA GTACCTGGCC
GAGGAGGTGC GCGAGCACCT GGCGGCGCTC GGCTTCCGCA GCCTGCAGGA GGCCGTCGGG
CACGCCGAGC TGCTGGACAC CTCCGCCGCG GTGGCGCACT GGAAGGCCTC CGGGCTGGAC
CTCGCGCCGC TGCTGCACGT CCCGGCGCTG CCCGAGGGCA CCGCGCTGCA CCGCACCCGC
GAGCAGGACC ACGGCCTGGA CAAGGCGCTG GACCACCAGC TCATCGCGGT GGCGCAGCCG
GCGATCGCCA GGCGCGAGCC GGTCCGCGCG CAGTTCCAGA TCCGCAACGT CAACCGCACC
GTCGGCACGA TGCTCTCGCA CGAGGTCGTG AAGGCGCACC GCGGCGAGGG CCTGGCCGAG
GGCACCATCG ACCTGACCTT CGTGGGCTCG GCGGGCAACT CCTTCGGCGC GTTCCTGGCG
CCGGGCATCA CCCTGCGGCT GGAGGGCGAC GCCAACGACT ACGTCGGCAA GGGCCTGTCC
GGCGGCCGCA TCGTGGTCCG CCCGCACCGC GAGGCCGCGA CGATCAACGA CGCCGCCGAG
CGCAACGTGA TCGCCGGCAA CGTCATCGCC TACGGCGCCA CCAGCGGCCG CATCCACCTG
CGCGGCACGG TCGGCGAGCG CTTCTGCGTC CGCAACTCCG GCGCCACCGC GGTCGTGGAG
GGCGTGGGGG ACCACGCCTG CGAGTACATG ACCGGCGGCA CCGTGGTCGT GCTCGGCGAG
CACGGCCGCA ACCTGGCCGC CGGCATGAGC GGCGGCACCG CCTACGTGCT GGACCTGAAG
GTCTCCCGCG TCAACTCCGA GATGGTCAAC GTCGAGGCGC TCGACGCCGA GGACCGGGCC
CTGCTCCACA CCCTGGTGCA GGAGCACCAG GAGGAGACCG GCTCCGCCGT CGCCGAGGCG
CTGCTGGCCG ACTGGGGCGC GCACGTCGGG CGGTTCGCCA AGATCATGCC GGTCGACTAC
AAGCGGGTGC TGACCGCCCG CGCCGCGGCC CAGGCCGCCG GCCTTTCCGA AGAGCAGACC
CTCGACAAGA TCATGGAGGC GACTCGTGGC TGA
|
|---|
| Protein sequence | MAFPAIPPGR PGSSRPEAQA AAQAAAASTS AAPLFSALPE AQGLYDPRAE KDSCGVAFVA
TLTGIASHGI VDQALQALVN MEHRGASGAE PSTGDGAGIL VQVPDAFLRA VLSESGARFD
LPPAGHYAVG VAFLPTDDDA AREAEIRVEA IAAEEHLAVL GWRELPTNPE GLGNGALSVM
PRFRQLFVTG TGGQSGIELD RLAFALRKRA ERDAQVYFPS LSARTLVYKG MLTTAQLETF
FPDLLDERFA SAIGLVHSRF STNTFPAWPL AHPYRFVAHN GEINTVIGNR NWMRARESDL
ATDLIGGDLD RLFPICTPGA SDSASFDEAL ELLHLGGRSL PHAVLMMIPE AWENHGEMDA
ARRAFYAYHS SFMEPWDGPA DMVFSDGTLI GAVLDRNGLR PSRYWVTDDG LVVLASEFGV
LDIDPATVVR KGRLQPGRMF LVDTAAGRIV EDEEIKAALA AAEPYAEWLH AGRIKLDKLP
EREHIVHTRA SVTRRQQTFG YTEEELRVLL APMARTGGEP LGSMGSDTPI AVLSEKPRLV
FEYFSQLFAQ VTNPPLDAIR EELVTSLATT IGPETNLLDP TAAACRQVEV AFPVIDNDEL
AKLIHINADG DLPGLRAVTV SGLYRVAGGG PALRARLEEI REEVSKAIAG GARIIVLSDR
HSDAEHAPIP SLLLTSAVHH HLIREKTRTH VGLVIEAGDV REVHHVALLI GYGAAVVNPY
LAMESVEEMA GSGHLGLIEP DQAIRNLIKA LGKGVLKVMS KMGISTVASY RGAQIFEAVG
LAQDVVDEYF TGTTSKLGGV GLETLAEETA RRHARAYPKQ SGTSRLAHRR LEIGGEYQWR
REGEPHLFDP DTVFRLQHST REKRYDIFKQ YTSRVDEQSE RLMTLRGLFK FKDGARAPIP
IEEVEPISDI VKRFSTGAMS YGSISAEAHQ TLAIAMNQLG AKSNTGEGGE DVDRLRDPER
RSSIKQVASG RFGVTAEYLA EADDIQIKMA QGAKPGEGGQ LPGHKVYPWV AKTRHSTPGV
GLISPPPHHD IYSIEDLAQL IHDLKNANRD ARVHVKLVAE VGVGTVAAGV SKAHADVVLI
SGHDGGTGAS PLTSLKHAGA PWELGLAETQ QTLLLNGLRD RIVVQTDGQL KTGRDVLIAA
LLGAEEYGFA TAPLVVSGCV MMRVCHLDTC PVGVATQNPE LRARFNGRPE FVVTFFEYLA
EEVREHLAAL GFRSLQEAVG HAELLDTSAA VAHWKASGLD LAPLLHVPAL PEGTALHRTR
EQDHGLDKAL DHQLIAVAQP AIARREPVRA QFQIRNVNRT VGTMLSHEVV KAHRGEGLAE
GTIDLTFVGS AGNSFGAFLA PGITLRLEGD ANDYVGKGLS GGRIVVRPHR EAATINDAAE
RNVIAGNVIA YGATSGRIHL RGTVGERFCV RNSGATAVVE GVGDHACEYM TGGTVVVLGE
HGRNLAAGMS GGTAYVLDLK VSRVNSEMVN VEALDAEDRA LLHTLVQEHQ EETGSAVAEA
LLADWGAHVG RFAKIMPVDY KRVLTARAAA QAAGLSEEQT LDKIMEATRG
|
|---|
| |