Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_5672 |
Symbol | rpsA |
ID | 8337032 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 6542747 |
End bp | 6544228 |
Gene Length | 1482 bp |
Protein Length | 493 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644958776 |
Product | 30S ribosomal protein S1 |
Protein accession | YP_003116372 |
Protein GI | 256394808 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0539] Ribosomal protein S1 |
TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.457368 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGAGCA GCACCGAGAC CGCCCGAACG CCTCAGGTCG CCATCAACGA CATCGGTTCG GCGGAGGAAT TCCTCGCCGC GATCGACCTG ACCATCAAGT ACTTCAACGA CGGCGACATC GTCGAAGGTG TCATCGTCAA GGTCGACCGG GATGAAGTCC TGCTCGACAT CGGTTACAAG ACCGAGGGTG TGATCCCGTC CAGGGAGCTC TCGATCAAGC ACGACGTCGA CCCCAACGAG GTCGTCGCCG TGGGCGACCA CATCGAGGCC CTCGTCCTCC AGAAGGAGGA CAAGGAAGGC CGCCTGATCC TGTCCAAGAA GCGCGCGCAG TACGAGCGCG CCTGGGGCAC GATCGAGGAG ATCAAGGAGA AGGACGGCAT CGTCACCGGT ACCGTCATCG AGGTCGTCAA GGGTGGTCTC ATCCTGGACA TCGGTCTCCG TGGCTTCCTG CCGGCCTCCC TGGTCGAGAT GCGCCGCGTG CGCGACCTGC AGCCGTACGT CGGCAAGGAG CTCGAGGCCA AGATCATCGA GCTGGACAAG AACCGCAACA ACGTGGTCCT GTCCCGCCGC GCCTGGCTCG AGCAGACCCA GTCCGAGGTC CGCCAGAACT TCCTCACGAC CCTGCAGAAG GGTCAGGTCC GCTCCGGCGT CGTGTCCTCG ATCGTCAACT TCGGCGCGTT CGTGGACCTC GGCGGCGTGG ACGGTCTGGT GCACGTCAGC GAGCTGTCCT GGAAGCACAT CGACCACCCC TCCGAGGTCG TCGAGGTCGG CCAGGAGGTC ACGGTCGAGG TCCTGGACGT CGACATGGAC CGCGAGCGCG TCTCGCTGTC CCTGAAGGCG ACCATGGAGG ACCCGTGGCA GACCTTCGCC CGCACCCACG CCATCGGGCA GGTCGTGCCG GGTAAGGTCA CCAAGCTGGT GCCGTTCGGC GCGTTCGTCC GGGTGGACGA GGGCATCGAG GGCCTGGTCC ACATCTCCGA GCTGGCCGAG CGCCACGTGG AGGTCCCGGA GCAGGTCGTC AACGTGGGCG ACGAGATCTT CGTCAAGGTC ATCGACATCG ACCTGGACCG CCGTCGCATC TCGCTGTCGC TGAAGCAGGC CAACGAGGGC CTCACCGGCG ACATCGAGAC CGACCAGTTC GACCCGGCGC TGTACGGCAT GGCCGCCACC TACGACGACC AGGGCAACTA CATCTACCCC GAGGGCTTCG ACCCGGAGAC GGGCGAGTGG CTCGAGGGCT ACGACGCCCA GCGCGAGGTG TGGGAGGGGC AGTACGCCGA GGCCCACACC CGCTACGAGT CGCACCAGAA GCAGATCGCC GAGGCCCGCA AGGCCGACGC CGAAGCCGGT GTCCAGGAGA ACGCCGAGGG TGCGCCCTCG TCCTACTCCT CGGGTGTCGT CGAGGAGACC ACCGGCGGTG CCCTGGCCTC CGACGAGGCC CTGGCCGCGC TGCGCGAGAA GCTGTCGGGC GGCCAGAGCT GA
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Protein sequence | MTSSTETART PQVAINDIGS AEEFLAAIDL TIKYFNDGDI VEGVIVKVDR DEVLLDIGYK TEGVIPSREL SIKHDVDPNE VVAVGDHIEA LVLQKEDKEG RLILSKKRAQ YERAWGTIEE IKEKDGIVTG TVIEVVKGGL ILDIGLRGFL PASLVEMRRV RDLQPYVGKE LEAKIIELDK NRNNVVLSRR AWLEQTQSEV RQNFLTTLQK GQVRSGVVSS IVNFGAFVDL GGVDGLVHVS ELSWKHIDHP SEVVEVGQEV TVEVLDVDMD RERVSLSLKA TMEDPWQTFA RTHAIGQVVP GKVTKLVPFG AFVRVDEGIE GLVHISELAE RHVEVPEQVV NVGDEIFVKV IDIDLDRRRI SLSLKQANEG LTGDIETDQF DPALYGMAAT YDDQGNYIYP EGFDPETGEW LEGYDAQREV WEGQYAEAHT RYESHQKQIA EARKADAEAG VQENAEGAPS SYSSGVVEET TGGALASDEA LAALREKLSG GQS
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