Gene Caci_5562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5562 
Symbol 
ID8336922 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp6412769 
End bp6414250 
Gene Length1482 bp 
Protein Length493 aa 
Translation table11 
GC content74% 
IMG OID644958666 
Productdrug resistance transporter, EmrB/QacA subfamily 
Protein accessionYP_003116262 
Protein GI256394698 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2271] Sugar phosphate permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCTCAGA CCGATCAGAT CGCCGACTCG CCGCCGTCCT TGCCGGACGC GGTCGTCGTG 
CCCGGCCAGC GCCTCGGCGG CTCGCGCGCG GGCAACAAGA CCGCGCTGCT GGTCATCGCC
TGTGTCGCAC AGTTCATGGT GGTGCTGGAC GTCAGCATCG TGAACGTCGC GCTGCCGGCC
ATGCGCGGTG CGCTCGACCT GTCGCCGACC GGCGTGCAGT GGGTCGTGAA CGCCTACGCG
CTCGGCTTCG CCGGGCTCCT GCTGTTCGGC GGACGCGCCG CCGACCTGTT CGGCGCCAAG
CCGGTGTTCC TCACCGGACT GGTCGGCTTC ACTGCCGCAA GCCTGGCCGG CGGCATGGCC
GACACCGGCG GTCTGCTCAT CGCCGCCCGC TCGGTGCAGG GCCTGGCCGG CGCGGTGCTG
GCACCGGCGA CCATGACGCT GATCATGACC ACCTTCACCG ACCCGCGCGA GCGCACCAAG
GCCCTCGGCG CCTGGAGTGC GACGATGGCG GCCGGCGGCG CGATGGGCGC GGTCGTCGGC
GGGATGCTCA CGCAGTGGGT GAGCTGGCGC TGGGTGCTGT TCGTCAACGT GCCGATCGGC
GTGGCGCTGA TCCTGGCGGC CGTGCCGCTG ATCGCCCGCA CCCGCGGCCG CGGCGCCACG
CTGCGGACCC TGGACCTGCC CGGCGCGATC ACCGTCACGC TCGGTCTGAC CGGGATCGTG
TACGGCGTCG TCACCACCGA CACGCACAGT TGGGGCTCCG GCGCGGTGCT CGCGCCGATG
GTCGCCGGTG CCGTGCTGCT GGCGCTGTTC GTCCTGCTGG AGGCGCGCAG CAAGCACGCC
CTGGTGCCAC TGCGCGTGTT CCGCAACCGC TCGCTGGCCG TGGCCGACGT CGCCGCGCTG
CTGATCGGCG CGGGCATGTT CGCCATGTGG TTCTACGTCA GCCTCTACCT GCAGCAGGTG
CTCGGCTTCG ACGCGCTGCA GGCGGGCTTC GCCTTCGTCC CGGGCTCGGC GATGATCGTG
CTGGGCACGA TGCTGGCCAC CCGCGCGCTG GCGAAGATCG GCCCGCGGCC GCTGCTGCTG
GCCGGCCCGC TGGTCGCGGC GGTCGGCCTG GCCTGGCTCT CGCGCTTCCC GGCCGGCGGC
TCCTACACCG CCGACGTGCT CGGCCCGCTG ATGCTGCTGA CCTTCGGCAT GGGCCTGGCC
ATGACGCCGC TGGCGGTCGC CGGCACCGCG GGCATGCCGC GGCACGAGGC GGGTCTGGCC
TCTGGACTGA TCAACACCTC CCGGCAGGTC GGCGGCGCGA TCGGCCTGGC CGCGCTGTCC
ACGATCTCCG CGCACATCGC CGCCCACCAC GGCGGCAGCC TCAAGGAGGC CACGGCCGCC
GGCTACAGCG GGGCGATGGT CGGCGCGGCG ATCGTGGTGG CCGCGGCCGG TGTCGTGGCG
GCGCTGCTGC CGCGGCGGGG GAGCGAGCCG GTCAAGGGGT AG
 
Protein sequence
MSQTDQIADS PPSLPDAVVV PGQRLGGSRA GNKTALLVIA CVAQFMVVLD VSIVNVALPA 
MRGALDLSPT GVQWVVNAYA LGFAGLLLFG GRAADLFGAK PVFLTGLVGF TAASLAGGMA
DTGGLLIAAR SVQGLAGAVL APATMTLIMT TFTDPRERTK ALGAWSATMA AGGAMGAVVG
GMLTQWVSWR WVLFVNVPIG VALILAAVPL IARTRGRGAT LRTLDLPGAI TVTLGLTGIV
YGVVTTDTHS WGSGAVLAPM VAGAVLLALF VLLEARSKHA LVPLRVFRNR SLAVADVAAL
LIGAGMFAMW FYVSLYLQQV LGFDALQAGF AFVPGSAMIV LGTMLATRAL AKIGPRPLLL
AGPLVAAVGL AWLSRFPAGG SYTADVLGPL MLLTFGMGLA MTPLAVAGTA GMPRHEAGLA
SGLINTSRQV GGAIGLAALS TISAHIAAHH GGSLKEATAA GYSGAMVGAA IVVAAAGVVA
ALLPRRGSEP VKG