Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_5562 |
Symbol | |
ID | 8336922 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 6412769 |
End bp | 6414250 |
Gene Length | 1482 bp |
Protein Length | 493 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 644958666 |
Product | drug resistance transporter, EmrB/QacA subfamily |
Protein accession | YP_003116262 |
Protein GI | 256394698 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2271] Sugar phosphate permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTCTCAGA CCGATCAGAT CGCCGACTCG CCGCCGTCCT TGCCGGACGC GGTCGTCGTG CCCGGCCAGC GCCTCGGCGG CTCGCGCGCG GGCAACAAGA CCGCGCTGCT GGTCATCGCC TGTGTCGCAC AGTTCATGGT GGTGCTGGAC GTCAGCATCG TGAACGTCGC GCTGCCGGCC ATGCGCGGTG CGCTCGACCT GTCGCCGACC GGCGTGCAGT GGGTCGTGAA CGCCTACGCG CTCGGCTTCG CCGGGCTCCT GCTGTTCGGC GGACGCGCCG CCGACCTGTT CGGCGCCAAG CCGGTGTTCC TCACCGGACT GGTCGGCTTC ACTGCCGCAA GCCTGGCCGG CGGCATGGCC GACACCGGCG GTCTGCTCAT CGCCGCCCGC TCGGTGCAGG GCCTGGCCGG CGCGGTGCTG GCACCGGCGA CCATGACGCT GATCATGACC ACCTTCACCG ACCCGCGCGA GCGCACCAAG GCCCTCGGCG CCTGGAGTGC GACGATGGCG GCCGGCGGCG CGATGGGCGC GGTCGTCGGC GGGATGCTCA CGCAGTGGGT GAGCTGGCGC TGGGTGCTGT TCGTCAACGT GCCGATCGGC GTGGCGCTGA TCCTGGCGGC CGTGCCGCTG ATCGCCCGCA CCCGCGGCCG CGGCGCCACG CTGCGGACCC TGGACCTGCC CGGCGCGATC ACCGTCACGC TCGGTCTGAC CGGGATCGTG TACGGCGTCG TCACCACCGA CACGCACAGT TGGGGCTCCG GCGCGGTGCT CGCGCCGATG GTCGCCGGTG CCGTGCTGCT GGCGCTGTTC GTCCTGCTGG AGGCGCGCAG CAAGCACGCC CTGGTGCCAC TGCGCGTGTT CCGCAACCGC TCGCTGGCCG TGGCCGACGT CGCCGCGCTG CTGATCGGCG CGGGCATGTT CGCCATGTGG TTCTACGTCA GCCTCTACCT GCAGCAGGTG CTCGGCTTCG ACGCGCTGCA GGCGGGCTTC GCCTTCGTCC CGGGCTCGGC GATGATCGTG CTGGGCACGA TGCTGGCCAC CCGCGCGCTG GCGAAGATCG GCCCGCGGCC GCTGCTGCTG GCCGGCCCGC TGGTCGCGGC GGTCGGCCTG GCCTGGCTCT CGCGCTTCCC GGCCGGCGGC TCCTACACCG CCGACGTGCT CGGCCCGCTG ATGCTGCTGA CCTTCGGCAT GGGCCTGGCC ATGACGCCGC TGGCGGTCGC CGGCACCGCG GGCATGCCGC GGCACGAGGC GGGTCTGGCC TCTGGACTGA TCAACACCTC CCGGCAGGTC GGCGGCGCGA TCGGCCTGGC CGCGCTGTCC ACGATCTCCG CGCACATCGC CGCCCACCAC GGCGGCAGCC TCAAGGAGGC CACGGCCGCC GGCTACAGCG GGGCGATGGT CGGCGCGGCG ATCGTGGTGG CCGCGGCCGG TGTCGTGGCG GCGCTGCTGC CGCGGCGGGG GAGCGAGCCG GTCAAGGGGT AG
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Protein sequence | MSQTDQIADS PPSLPDAVVV PGQRLGGSRA GNKTALLVIA CVAQFMVVLD VSIVNVALPA MRGALDLSPT GVQWVVNAYA LGFAGLLLFG GRAADLFGAK PVFLTGLVGF TAASLAGGMA DTGGLLIAAR SVQGLAGAVL APATMTLIMT TFTDPRERTK ALGAWSATMA AGGAMGAVVG GMLTQWVSWR WVLFVNVPIG VALILAAVPL IARTRGRGAT LRTLDLPGAI TVTLGLTGIV YGVVTTDTHS WGSGAVLAPM VAGAVLLALF VLLEARSKHA LVPLRVFRNR SLAVADVAAL LIGAGMFAMW FYVSLYLQQV LGFDALQAGF AFVPGSAMIV LGTMLATRAL AKIGPRPLLL AGPLVAAVGL AWLSRFPAGG SYTADVLGPL MLLTFGMGLA MTPLAVAGTA GMPRHEAGLA SGLINTSRQV GGAIGLAALS TISAHIAAHH GGSLKEATAA GYSGAMVGAA IVVAAAGVVA ALLPRRGSEP VKG
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