Gene Caci_5483 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5483 
Symbol 
ID8336841 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp6323005 
End bp6323757 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content68% 
IMG OID644958585 
Producttranslation initiation factor IF-3 
Protein accessionYP_003116183 
Protein GI256394619 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0290] Translation initiation factor 3 (IF-3) 
TIGRFAM ID[TIGR00168] translation initiation factor IF-3 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.195942 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATCAGCACTG AGCCCCGTAT CAACGACCGG ATCCGCGTTC CCGAAGTGCG GCTGGTCGGC 
CCCAACGGTG AGCAGGTCGG CATCGTGTCG ATCCAGGACG CGCTCCGGCT GGCTCAGGAG
CAGGATCTCG ACCTGGTCGA GGTCGCGGCG ACCGCACGGC CGCCGGTCGT CAAGGTCATG
GACTACGGCA AGTACAAGTA CGAGTCCGCC CTGAAGGCCC GTGAGGCGCG CAAGAACCAG
GCGCACACGG TCATCAAGGA GATGAAGCTC CGCCCGAAGA TCGACCCGCA CGACTACGAG
ACCAAGAAGG GTCACGTGGT GCGGTTCCTG AAGGCCGGGG ACAAGGTCAA GATCACCATC
ATGTTCCGCG GCCGCGAGCA GTCCCGGCCC GAACTCGGCC GGCGCCTGCT GAGCAAGCTC
GCCGAGGACG TGGCCGAGCT CGGCTTCGTG GAGTTCGCGC CGAAGCAGGA CGGCCGCAAC
ATGATCATGG TCCTCGGCCC GCACAAGAAG AAGACCGAGG CCATGGCCGA GGCGCGGCTG
GCCAAGGAGC AGCGCAAGGC CGGCGGTGTG GTCGGGGAGA CCGAAACCGC CGACGCCGAG
GCCCTGGACA CCGAGGTGCT CGACACCGAG GCCCTGGACA CCGAGGCCGA GACGACCGAG
ACCGCCGAGT CGGCGGAGTC GGCCGAGCAG ACCGAAGGCC TTGTCGGTGC CGCCGCGGCG
GCCGCCGACC AGACCGGCGA AGAGCAGTCC TGA
 
Protein sequence
MSTEPRINDR IRVPEVRLVG PNGEQVGIVS IQDALRLAQE QDLDLVEVAA TARPPVVKVM 
DYGKYKYESA LKAREARKNQ AHTVIKEMKL RPKIDPHDYE TKKGHVVRFL KAGDKVKITI
MFRGREQSRP ELGRRLLSKL AEDVAELGFV EFAPKQDGRN MIMVLGPHKK KTEAMAEARL
AKEQRKAGGV VGETETADAE ALDTEVLDTE ALDTEAETTE TAESAESAEQ TEGLVGAAAA
AADQTGEEQS