| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_5339 |
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| Symbol | |
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| ID | 8336693 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 6154446 |
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| End bp | 6155198 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644958437 |
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| Product | Xylose isomerase domain protein TIM barrel |
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| Protein accession | YP_003116039 |
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| Protein GI | 256394475 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00377604 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.870166 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCGCA AGCCGAGCGT GCAGCTCTAC ACCGTCCGCG ACCACTTGAC CGACATCTCC
CAGCGCGAGG GCACCCTGAA GCGCCTCGCC GACATCGGCT TCACCGCCGT CGAGCCCTTC
GACCCGACGA CGGACCCGGC GGGCTTCCGC GCCCTGGCCG ACGACCTGGG ACTGTCCGTC
TCCGGCGCGC ACGCCATGGC GCTGGTGCGC GAGCCGGACA CCGGGCCGGT GTTCGAAGCC
CTCGCCACCA TCGGCACCGA CCTGGCGATC CTCCCGGCCG GCATCCCGGA GGAGACGTTC
ACCACCCACG ACGGGCTCAA GCGCGCCGCG GACCAGCTGA ACGCGCTGGC GGCGAAGGCC
GCCGAGGCCG GACTGCGGTT CGGCTACCAC AACCACTGGT GGGAGTTCGA GCCCGTCCTG
GAGGGCCGCC ACGCCCTGGA GATCCTGGTC GACCTGGTCG ACCCGGCGGT GGTCTTCGAG
GTGGACACCT ACTGGGCCAC GGTCGGCGGC GCGGATGCCG CGGCGGTCCT GGAGCGCCTG
GGCGAGCGCG TGGTGGCGCT GCACGTCAAG GACGGTCCGA CGGTCAAGGG CGAGCCGAAC
GTCGCCGTCG GCACCGGCGC GATGCCGGTG CCCGCGGTCC TGGCCGCCGC GCCGGACGCC
TGGCGCGTGA TCGAGTTCGA CGAATGCGCC ACGGACATCT TCGAGGCGCT GGCGCAGAGC
CTGGCTTACG TGAACGATCT GGAGGGGACG TGA
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| Protein sequence | MTRKPSVQLY TVRDHLTDIS QREGTLKRLA DIGFTAVEPF DPTTDPAGFR ALADDLGLSV
SGAHAMALVR EPDTGPVFEA LATIGTDLAI LPAGIPEETF TTHDGLKRAA DQLNALAAKA
AEAGLRFGYH NHWWEFEPVL EGRHALEILV DLVDPAVVFE VDTYWATVGG ADAAAVLERL
GERVVALHVK DGPTVKGEPN VAVGTGAMPV PAVLAAAPDA WRVIEFDECA TDIFEALAQS
LAYVNDLEGT
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