| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_5248 |
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| Symbol | |
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| ID | 8336602 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 6043598 |
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| End bp | 6045085 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644958346 |
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| Product | DNA polymerase LigD, ligase domain protein |
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| Protein accession | YP_003115948 |
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| Protein GI | 256394384 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.19885 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGACCCGG ACCGCCTGCA CGCCTACCGC GCCAAGCGCG ACGCGGCGCG CACGCCCGAG
CCGGTGCCCG AGGCAGCACC TGAGACAGCG CCCGAGGCGA AACCGAGGAC GCGCAGAGGC
AGGAAACCGA TCTTCGTGGT CCAGGAACAC CGCGCCACCG CCCTGCACTG GGACTTCCGC
CTGGAGCGTG ACGGCGTGCT GGTCTCCTGG GCGCTACCGA AGGGCGTCCC CACCGACCCC
AAGCGCAACC ACCGCGCCGT GCACACCGAG GACCATCCGG TCGAATACGC CGACTTCACC
GGACGCATCC CGGCCGGCGA ATACGGCGCG GGAACCGTTG CCACGTATGA CCGCGGCACG
TACGTAGTGG AGAAGTGGAC CGACGACGAG GTCAAAGTCG AACTGACGGG CGAGCGCCTC
TCCGGCCACT ACACCCTGTT CCGCACCGGC GGCTCCGACT GGATGATCCA CCGCGAGAAG
GGTCAGGACC CTGACTTCGC GGCGGTCCCC GACGACCTGC GGCCGATGCT GGCGATCCCC
GGCACCGCCC CGGCCGGCGC CGGCTGGGCC TGCGAGTTCA AGTGGGACGG TATCAGGGCC
CTGTGCCGGG TCGAGGGCGG CCGGGCCCGG CTGCGCTCGC GCAACGGCAA CGACCTCAGC
GAAACCTACC CCGAGCTCAA AGCCCTGGCC AAGACGGTCA GCAGCGCGCA GCTGCTACTG
GACGGCGAGA TCATCGCGCT GGACGAGGAC GGCAAGGTCA GCTTCGGGGC GTTGCAGACC
CGCTTCGGCA CCAGCGGATC GGAGGCGGCG CGGCTGTCCC GGACGAATCC GGCCTCGTAC
TTGGTCTTCG ACCTGCTGCA TCTGGACGGC CGCTCGACCC TGGACCTGCC CTACAAGGAC
CGCCGGGAGC TGCTGGAATC CCTGGAGCTG TCCGGACCGC ACTGGCAGAC CCCGCCTTCG
TTCCCTGACA CACCCGTGGC CGACGTGCTG GAGGCGGCGC GCGCCGCCGG GCTGGAAGGC
GTGGTGGCCA AGCGGCTGGA TTCGACGTAC CAGCCCGGGA CGCGCTCGCC AGCGTGGCGC
AAGGTCAAGC TGACCGAGTC CCAGTCGGCG GTGATCGGCG GCTTCACGCC GTTGAAGAGC
CAGGGCGCCG CCACCGGACG TGCGGCCCGG GGATCCCAGA TCGGCGCGCT GCTGCTGGGC
GTGCCGGACG AGGCCGGGCG GCTGCGCTAC GTCGGCAAGG TGGGCAGCGG CTTCACCGAG
CAGGATCGCA GGGTTCTGCT GGAGGCGCTG TCGGAGCTGG CGGTGGCCGA GAGTCCGTTC
GCCACTGCCG TGGACGCCGT CGACGCGCGC GTGGCGACGT GGGTCGAGCC GGTGGTGGTG
GCCGAGGTGA CGTTCGGGGA GTGGACGTCG AAGGGCCGGC TGCGCCACCC GGTGTTCAAG
GGCATCCGCA CCGACAAGGA CGCCGCGGAG GTGGTCCGTG AGTCCTGA
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| Protein sequence | MDPDRLHAYR AKRDAARTPE PVPEAAPETA PEAKPRTRRG RKPIFVVQEH RATALHWDFR
LERDGVLVSW ALPKGVPTDP KRNHRAVHTE DHPVEYADFT GRIPAGEYGA GTVATYDRGT
YVVEKWTDDE VKVELTGERL SGHYTLFRTG GSDWMIHREK GQDPDFAAVP DDLRPMLAIP
GTAPAGAGWA CEFKWDGIRA LCRVEGGRAR LRSRNGNDLS ETYPELKALA KTVSSAQLLL
DGEIIALDED GKVSFGALQT RFGTSGSEAA RLSRTNPASY LVFDLLHLDG RSTLDLPYKD
RRELLESLEL SGPHWQTPPS FPDTPVADVL EAARAAGLEG VVAKRLDSTY QPGTRSPAWR
KVKLTESQSA VIGGFTPLKS QGAATGRAAR GSQIGALLLG VPDEAGRLRY VGKVGSGFTE
QDRRVLLEAL SELAVAESPF ATAVDAVDAR VATWVEPVVV AEVTFGEWTS KGRLRHPVFK
GIRTDKDAAE VVRES
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