Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_5165 |
Symbol | |
ID | 8336519 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 5932816 |
End bp | 5934567 |
Gene Length | 1752 bp |
Protein Length | 583 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644958263 |
Product | protein serine phosphatase with GAF(s) sensor(s) |
Protein accession | YP_003115865 |
Protein GI | 256394301 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.115407 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.0326575 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACGAG ACGGCGGAGC CTCGCGGAGT GATCGTCCAG GAGGGCGCGC CGACGCCCTG CTCGGTACCG TCGCGTCGTT GAGCTCCGAG CTGCTGCTCG ACGTGCTCGC CGAAGCTCCG GTCGGGATGG GCCTGCTCGA CGCGGAACTG CGTTGGGTCT ACGCCAACGC CGCCTTCTTC AGCACGACCG ACCTGGCGGC GTCTCAGATT CTGAACAGGC CGGTCGTCGC GACGCCGTTC GCCGCCGATC TGCCCGCGAT CAGCCGGGTG CTGCTCGGCG GGAACGTCCG GGACGACGCC GACGGCGGCG CGTCCGGACC GGTCACCGCG ACGGCGACCG GCTGGCACGT CCGCTATCGG CGGTTGGCGG CCGACGGCCG GATCACCGGG GTCGTGGCGG CCGTGACCGG GCCCGCGACG CCTGAGCAGA CCGGTCTCGA CCTGGCGCGG CGCCGATTGG CTGTGCAGGG TGCCGCCGCC GAGCGCATCG GCACTACGCT GGACGTGGAC ATCACCTGCA TCGAGGTGGC CGAGTTCACC GTGCCGACGA TGGCCGATCT GACGATCGTC GAGGTGATGC CGTATGGGAT CGCCGATCGC GGCGCCGGTC CGGGCCCGGG TCCGAGCGGT TCCGGCTCGT TGGAGGCGCC CCGGCTGCGC CGGGCGGCCC TGGCCTGCGC TCCGGATCTG CGCCGCCGGC TCGGCGCGCT CGCCCTGCCC GGCGCCTCGG TGCGGCCCGG TGCCGAATCG GCGGTCGCGC GGAGTCTGGC CGAGAGCCGG TTAGTGGTCG GCAACCAGTT GTCCGACAGG GAGTTGGAAG ACTGGGCAGA GAGCGTCGAA GCCCTGGCCG CCTATCGGAT GGCCGGTGTG GACTCGATCC TCGCTGTTCC GTTGAGTGCG CGCGGGCAGC TGGTCGGCGT GATGACGCTG GCGCGCAGCA GCCGTGGCGG CTCGCCGGGG TTCAGCGACG ACGACACCGT GCTGATCCAA GACCTCGCCG ATCGGGCCGC GGTCAGTATC GAGAACGCGC GGCAGTACGC CGACTCCCAG AGCGTGACGC TGGAGCTGCA GCGTGCGCTG CTGGTCGAGC CGGGGCGTCC GCACGCGAAC CTCGAAGTCG CCGCGCGCTA CCTGCCCTCC GGCAACCGCG CGCTGGTCGG CGGCGACTGG TACGAGATCG TCCGGCTGCC GTTCGGACGG ACGCTGCTGG TGATGGGCGA CGTCATGGGA CACGGCGTCG AGGCGGCGGT CGACATGAGC ATCTATCGCT CGGCGATCCG TGACGCCGGG GGCATGGACC TGCCACCGCA CGGGATTCTG CGGCATCTGG ACACCCTGAT CTCGCAGGAC GAGTCGGCGC GGCCGGCGAC GTGCCTGCTC GGCGTCGCCG ATCCGAACCG GGGGCGCTGG ACGTTCGCCA GCGCCGGGCA TCTGCCGCCG GCGCTGTTCT CCGCGGGGCG CCCGACCGAG TTGGTCGCCA TTCCCACCGG TCCGCCGCTG GGGACCGGGT ACGGCGGGTA CGAGCAGGCG ATCGTCGATC TGCGAGCCGA TCAGGTGTTG TTGATGTACA CCGACGGTCT CGTGGAGCGG CGCGGCGAGG ACATCGACGT CTCCCTCGCC CGGCTCGCAG CACTGCCGCT GCCCGCCGGG GGCGGGTTGG AGGATCTTCT CGACGACGCG CTGCGGCTGG TCGCGCCGCC TGCGGTCGAG GACGACATCG CGATTCTGGC CACTCGCGCG ACGCCTCGGT AA
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Protein sequence | MERDGGASRS DRPGGRADAL LGTVASLSSE LLLDVLAEAP VGMGLLDAEL RWVYANAAFF STTDLAASQI LNRPVVATPF AADLPAISRV LLGGNVRDDA DGGASGPVTA TATGWHVRYR RLAADGRITG VVAAVTGPAT PEQTGLDLAR RRLAVQGAAA ERIGTTLDVD ITCIEVAEFT VPTMADLTIV EVMPYGIADR GAGPGPGPSG SGSLEAPRLR RAALACAPDL RRRLGALALP GASVRPGAES AVARSLAESR LVVGNQLSDR ELEDWAESVE ALAAYRMAGV DSILAVPLSA RGQLVGVMTL ARSSRGGSPG FSDDDTVLIQ DLADRAAVSI ENARQYADSQ SVTLELQRAL LVEPGRPHAN LEVAARYLPS GNRALVGGDW YEIVRLPFGR TLLVMGDVMG HGVEAAVDMS IYRSAIRDAG GMDLPPHGIL RHLDTLISQD ESARPATCLL GVADPNRGRW TFASAGHLPP ALFSAGRPTE LVAIPTGPPL GTGYGGYEQA IVDLRADQVL LMYTDGLVER RGEDIDVSLA RLAALPLPAG GGLEDLLDDA LRLVAPPAVE DDIAILATRA TPR
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