Gene Caci_5163 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5163 
Symbol 
ID8336517 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp5931257 
End bp5932225 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content68% 
IMG OID644958261 
ProductBeta-lactamase 
Protein accessionYP_003115863 
Protein GI256394299 
COG category[V] Defense mechanisms 
COG ID[COG2367] Beta-lactamase class A 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0157119 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGAGAT TCACGGAACG GATCGTTGTC CGCACGGTTT CGGTCGCGGC TTCGCTCGCC 
TTGGTGGCGG CGGCGCTTGG CGGGTGTTCT TCGGCTTCGA ACGCGCCGAC ATCCTCGGTT
CCGTCAGCTT CATCGACATC ATCGACTCCG GCAGCTTCGT CGGCAGCGAG CACGTCCGCA
AGCACCGACA CCGATTCGGC GGCGTTCGCG CAGATCGCGG CGCACTATCA GGCGCAGCTC
GGCGTCTACG CCGTGGACAC CGGTTCGGGA CGCACGGTCG GGTACCAGGC GGACCAGCGG
TTCGCGTTCT GTTCGACGAT CAAGGCTCTG GCCGCCGCCG AGCTCCTGCA CCGTGACACC
GATGCGCAAC TCGCCCAGAC CATCCACTAC TCCGCCTCGG ATCTCGTCGA CTACTCCCCC
GTCACCTCCC AGCACGTCAA CGACGGCATG ACCCTCACCG CGGTGATGAC GGCGGCGATC
GAGGTCAGCG ACAACACCGC GCTGAACCTC ATGCTCGATC GGCTCGGCGG ACCGGCGGGG
TTGCAGACGG CATTGCGCGG CATGAATGAC GCGACGACCG ATGCCGACCG TCCCGAGCCG
GCGGTCAACT CCGCGGTGCC GGGCGACGTG CGCGACACCA GCACACCCCG TGCCATGGCT
GAGGATTTGC GCGCGTATGT ACTTGGCAAC GCGCTGTCCC CGCAGCGGCG TGCGTTGCTG
ACCTCGTGGC TGACGGCGAA CACCACCGGC GGCCCGTACA TCAGGGCTGC GGTGCCGGCG
GGCTGGACGG TCGGGGACAA GACCGGCAAC GGCGACTACG GCACGCGCAA CGACATCGCC
GTCCTGTGGC CGCCGCACCG CGCGCCGATC GTGATCGCAG TGCTCTCCCA TCGCGACGGC
AAGGACGCGA CCTCCGCCGA CGCCCTGATC GCCGACGCCA CGAAGGTCGC CCTTCAGCAG
CTCGGGTGA
 
Protein sequence
MRRFTERIVV RTVSVAASLA LVAAALGGCS SASNAPTSSV PSASSTSSTP AASSAASTSA 
STDTDSAAFA QIAAHYQAQL GVYAVDTGSG RTVGYQADQR FAFCSTIKAL AAAELLHRDT
DAQLAQTIHY SASDLVDYSP VTSQHVNDGM TLTAVMTAAI EVSDNTALNL MLDRLGGPAG
LQTALRGMND ATTDADRPEP AVNSAVPGDV RDTSTPRAMA EDLRAYVLGN ALSPQRRALL
TSWLTANTTG GPYIRAAVPA GWTVGDKTGN GDYGTRNDIA VLWPPHRAPI VIAVLSHRDG
KDATSADALI ADATKVALQQ LG