| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_5159 |
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| Symbol | |
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| ID | 8336513 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 5924921 |
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| End bp | 5927173 |
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| Gene Length | 2253 bp |
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| Protein Length | 750 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644958257 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_003115859 |
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| Protein GI | 256394295 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0655785 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0151156 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCGTCG AGGCTGAGGC TGAGGCCGGT ACGGGCAGCG CCGCTCCCGC ACCTGACGCT
GCTCCCGGCG CCGTCCCCGA CGCCCCCGCC GCGACCGCCG ATGGCGCCGA GGCGACTGCC
ACCGGCGACG CGGCCGCCGC CACCGACGTC CCCCGCCTGG ACCAGGACGA ACTCGACCGC
ATCTGCCTCT ACAACCTCCT GTCCGCCTGC GCCGACACCA TCTTCTTCAA GGACCGGGAG
TCGCGCTTCA TCCGGGTGAG CCGTAGTCAG GCCGACCTCA CCGGTGCCGA GAGTCCCACG
GAGATGATCG GCAAGACCGA CTTCGACTAC TTCACCTCCG CGCATGCCGG GAACGCGTTC
CAGGACGAGC AGAAGATCAT TCGGACTGGC GTCCCGATGT TCGACATCCG TGAGGCGAAC
ACGTTGCCGG ATGCCTCTGA GCGAGTCTTC AGCTGTAGCA AGCAGCCTCT GCGGGACTTC
GACGGCATGA TCATCGGCAC CTTCGGCATC TCCCGTGACA TCACCGCGCG GACCACCACC
GAGGCGCAGC TGCGGGCCAA GACCGCTGAG CTCGACCGGA TCGGGACCGA GCTGCGCGCG
CTGATCGAGT CCAGTCCTGA CCCGATGTGC CGGTTCGACC GGCAGCTGCG CTACACCTAC
GCCAACCCCG CTGCGCTGCG GGTGGCCGGC GTGCCCGAGA GCGAGCTGGT CGGGCGGACC
AACCGGGAGG CGGGGCATCA GGAAAAGTTC GTGCGGGAGT GGGAGCAGAC GCTGCGGCGG
GTGTTGCGGA CCGGTGTCGG CGACGAGGTG GAGCACGACC TGGTGCTGGC GGGGACTCGG
CGCTTCTTCC ACACGCGGCT GGTCCCGGAG CGGGACGCGA CGGGCACCGT GGTGAGCGTG
CTGACCGTCA GCCACGACCT GACCGACCGC AAGCGCATCG AGGACGCCCT GGCCGAGCAG
GCCGTGCGCG ACCCGCTGAC CCACCTGGCC AACCGCGCGC TGCTCGTCGA CCGGATCGAT
CAGGCACTGG CCAAGATGCG CGTGCAGGGC GGCCGGCTCG CGGTGCTGTT CCTGGACCTG
GACCGGTTCA AGGTGGTCAA CGACAGCCTC GGCCACGCCG CCGGCGACGC CCTGCTCGTG
GCCACCGCCG CTCGGCTGCG CAGCGCCGTA CGCCAGGGCA GCGACCTGGT CGCGCGCTTC
GGCGGCGACG AGTTCGTGAT CCTGTGCGAG CATGTCCAGG GACGCAAGGA CGCCGCGGAC
GTGGCCCGCC GGGTCACCCG CGCCCTGTCC GCCCCCTTCG AGCGCGACGG CCAGCCGATC
CACATCAGCG CCAGCATCGG CATCGCCGTC ACGTCCGACC CGATGACGAC GGCCGACGAG
CTGCTGCGGG ACGCCGACGC CGCCATGTTC CGGGTCAAGG CGCGCAACCA CGGCTCGGGC
AGCTACATCT TCTTCGACGA CAGCGTCCGC GAGGAGGCGG TCTCCCGGCT CTGGCTGGAA
GGCGAGCTGC GCCGTGCGAT CGAGGAGAAG GAGTTCCGCC TCGTCTACGA ACCCGTGTAC
AACCTGCGCG ACCGGCAGAT CATCGGGATG GAGGCCCTGA TCCGCTGGCA GCACCCCGAA
CGCGGCCTGC TCCCGCCGTC CACGTTCATC GAGATCGCAG AGGACTGCGA TCTCATCGTG
CCCATCGGCC GCTGGGTCCT GCACGAGGCG TGCGGGCAGC TCGCCGTCTG GAACCGGCGC
CGCGATCCCG GCAAGCCGCC GCTGACCATG GCGGTGAACC TGTCCCCGCG CCAGCTCAAC
GACGAAGGGC TGGTCGCCGA GGTCGCCAAC GCCCTGCGCG GCAGCGGGCT CGAGCCCGAG
CAGCTGACCC TGGAGGTCAC CGAGACCGCC GTGCACGAGG CTCCGCAGTT CGCCCAGGCG
GTCCTGTCGC AGGTCTCTGA TCTGGGCGTG CAGATCGCGC TCGACGACTT CGGCACCGGC
TACTCCTCCC TGGGCCACCT GCGCCGCATC CCCGCCAACG CGCTGAAGAT CGACCGTGCC
TTCGTCAACG GCCTGGAGCA CAAGGGCGGC GACACCGCGA TCGTCACCGC CGTCGTCACC
ATGGCGCACG CCCTGGGCAT GATCACCGTC GGCGAGGGCA TCGAGAGCGA GGCCCAGTAC
GAGTACCTGC GCGCGCTCGG CTGCGACCAG GGCCAGGGCT ACCTGTTCGC CGAGCCGGTC
TCCGCCGCGG CGTTCGAGAC GCTGCACCTA TGA
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| Protein sequence | MSVEAEAEAG TGSAAPAPDA APGAVPDAPA ATADGAEATA TGDAAAATDV PRLDQDELDR
ICLYNLLSAC ADTIFFKDRE SRFIRVSRSQ ADLTGAESPT EMIGKTDFDY FTSAHAGNAF
QDEQKIIRTG VPMFDIREAN TLPDASERVF SCSKQPLRDF DGMIIGTFGI SRDITARTTT
EAQLRAKTAE LDRIGTELRA LIESSPDPMC RFDRQLRYTY ANPAALRVAG VPESELVGRT
NREAGHQEKF VREWEQTLRR VLRTGVGDEV EHDLVLAGTR RFFHTRLVPE RDATGTVVSV
LTVSHDLTDR KRIEDALAEQ AVRDPLTHLA NRALLVDRID QALAKMRVQG GRLAVLFLDL
DRFKVVNDSL GHAAGDALLV ATAARLRSAV RQGSDLVARF GGDEFVILCE HVQGRKDAAD
VARRVTRALS APFERDGQPI HISASIGIAV TSDPMTTADE LLRDADAAMF RVKARNHGSG
SYIFFDDSVR EEAVSRLWLE GELRRAIEEK EFRLVYEPVY NLRDRQIIGM EALIRWQHPE
RGLLPPSTFI EIAEDCDLIV PIGRWVLHEA CGQLAVWNRR RDPGKPPLTM AVNLSPRQLN
DEGLVAEVAN ALRGSGLEPE QLTLEVTETA VHEAPQFAQA VLSQVSDLGV QIALDDFGTG
YSSLGHLRRI PANALKIDRA FVNGLEHKGG DTAIVTAVVT MAHALGMITV GEGIESEAQY
EYLRALGCDQ GQGYLFAEPV SAAAFETLHL
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