| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_5154 |
|---|
| Symbol | |
|---|
| ID | 8336508 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 5919847 |
|---|
| End bp | 5920671 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644958252 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_003115854 |
|---|
| Protein GI | 256394290 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.251711 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.0433393 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGAGG ATGTGAGCGA GAGCGCCGGG CGGCGGATGC TGATCACCGG TGCCGCCGGG
GGAGTGGGGA CGTTCCTGCG CACCGGTTTG GCGGCGCTCG GCTGGCAGCT GCGGTGCTTG
GATCTGCGGA TGCCGGACGA TCCCGGTGGG GCGGAGTGGA TTGTCGGCGA CATCAGCGAC
GCCGCGACGC TCGACGCCGC GATGGCGGGC ATCGACGTGG TGATCCACCT GGCGGCAATT
CCCATCGAAG ACCACTTCGA CGCGATTCTG CACGCCAACA TCGACGGCAC GTACCGGGTC
TTCGACGCCG CGGCGCGCGC CGGCGTGCCG CGCTTCCTGT TCGCCAGCAG CAACCACGCG
GTCGGGTACT ACGAGCGCTC GTCGCTGGGC AACGGACGCA TCCCAGCCGA CGCGCGGACC
CGCCCCGACA CGTTCTATGG CGTATCGAAG GTCTTCGGCG AAGCAATCGG CTCCTTCTAC
CACGACCGCC ACGGGCTTCA GGTGGCATGC GTGCGCATCG GCGCCTGCTA CGCCGAGCCC
AAGACCCGCC GCATGCTGGA CACCTGGTTC AGCCCCGGCG ACGCCGTGCG ACTCTTCCAC
ACCCTGGCGA CCACACCGGA CCTGGGCTAC GAGATCGTCT ACGGCGTCTC AGCCAACCGC
ACCGCCTGGG GCAACCTGGA CTCCGCCCGC CGCCTGGGCT ACGAACCGCA GGACGACTCC
TCAGCCTTCG CCGACCGCTT CGCCAACCAG CCGATCGACC CCGACGACCC CGAGGTCCGC
TACCTCGGCG GGGACTTCAC CACCGCGACG CCGGGTCCGC GCTGA
|
|---|
| Protein sequence | MPEDVSESAG RRMLITGAAG GVGTFLRTGL AALGWQLRCL DLRMPDDPGG AEWIVGDISD
AATLDAAMAG IDVVIHLAAI PIEDHFDAIL HANIDGTYRV FDAAARAGVP RFLFASSNHA
VGYYERSSLG NGRIPADART RPDTFYGVSK VFGEAIGSFY HDRHGLQVAC VRIGACYAEP
KTRRMLDTWF SPGDAVRLFH TLATTPDLGY EIVYGVSANR TAWGNLDSAR RLGYEPQDDS
SAFADRFANQ PIDPDDPEVR YLGGDFTTAT PGPR
|
|---|
| |