Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_5143 |
Symbol | |
ID | 8336497 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 5903912 |
End bp | 5906623 |
Gene Length | 2712 bp |
Protein Length | 903 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644958241 |
Product | transcriptional regulator, LuxR family |
Protein accession | YP_003115843 |
Protein GI | 256394279 |
COG category | [R] General function prediction only |
COG ID | [COG3899] Predicted ATPase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.497829 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.980659 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGGTGG GGCGACACGC CGAGTGCGCG CGGCTGGACG CCCTGCTGAC GGCGTTGCGG GACGGTCGCA GCGCGGCGCT CGTGGTGGTC GGCGAGGCCG GTGTCGGCAA GAGCGCGCTG CTGGACCACG CGGTGCGGTC CGGCACGGAC GTGCGCGTCA TGCGCGCCTC CGGTGTCGAA TCGGAGATGG AACTCCCCTA CGCCGCCTTG CACCAGCTGT GCCTGCCGCT GCTGGACGGG ATCAACCGGC TGCCGACGCC GCAGGCTGAC GCGCTGGCGC GGATCTTCGG CATGCGCGCC GGTGACGTGC CGAGCCCGTT CTTCGTCGGA CTCGGCATCC TCAACCTGCT CGCTGACGCC GCGCGCGAGC AGCCGTTGCT GTGTCTGGTG GACGACGCGC ACTGGCTCGA CGAGGCTTCG GCGCAGGTAC TCACTTTCGT GGCACGTCGG CTGCGTGCCG AGTCGATCCT CCTGGTGATC GCCAGTCGCC GCGCGATCCC TGCCATGCAG GGTCTGGCCG AGCTGACGGT CCGGGGTCTG GGCTCGGAGG ACGCGAAGCA GCTGTTGAAC TCCGTGCTGC GCTGGCCGAT GGATGACGGC GTCCGAGCGG CGATCCTTGC CGAGGCGCGC GGCAACCCGC TGGCGTTGCT GGAACTCCCG CTGGCTTCGC CCGATCGCCT CGCCGGCGGC TATGGCTTTC TGGAGGCGTC GGCGTTGCCG GGGCGGATCG AGGAGAGCTT CCGTCGGCGG ATCGCGGAGC TGCCCGCCGA TTGCCAGGAC CTGCTGCTGC TCGCCGCCGC CGACTCGACC GGCGACCCGG TGCTGGTCTG GCGTGCCGCC GCGAGCCTCG GGCTGAGTCC GGAAGCGGCG CGGCCGGCGG CTGAGGTGGA TCTGCTCGCG ATCGGTGTGC GGACCGCGTT CCGCCACGGT CTGGTCCGCT CGGCTGTGTA TCGCTCGGCG TCGGCGGAGG CCCGGCGGCG GGCGCACCGG GCTCTGGCTG AGGCGACGTC GGCTCAAGCC GATCCGGACC GGCGTGCCTG GCATCTGGCG CACGCCACGG AGAACCAGGA CGAGGCTGTC GCGCTGGAGT TGGAAGCCTC GGCGGATCGC GCGCAGTCCC GGGGCGGTCT GGCTGCGGCG GCTGCGTTCC TGGAACGCGC GGCGTCGCTG ACGGCCGATC CGGCGGTGCG CGCCGATCGG GAACTCGCCG CCGCGCAGGC GAAGTACCAC GCGGGGGCGC CGGAGGGTGC GCGTGTCCTG CTCGACAAGG TGGAAGCCGG TCCTGCCGAC GAGTTGCGGT CCGCTCAGGT CCGACACCTG CGCGCCTACA TGGCTTTCGC CACCGGGGAC TCCGCACAAG CGCCGGTTCT ATTGCTGGAC ACGGCTCGGC GGTTCGAGCG GCTCGACCCG GTGCTCTCGC GCGAGAACTA TCTGGACGCC CTCGCCTATG CGTTGATGGC CGGTCGCTAC GCCGACCGCG CGACCGTCGC GGACGTGGCC GCCGCCGCGC TGACGGCGCC CTCGGCCGGC GCGGACCCGC ACGCTCCGGA CCAGCTGCTC GACGCCTACG CCGTGCTGTT CACCGAAGGC CACGCCGCCG GGACTGCGCT GGTGCGGCGT GCGCTGGACG CCTTCCGCCG CGACGAGTTG CCGGTGGCGG AGGCGACGCG CTGGCTGGTC ATCGCCGCCC ACGGCGCCTA CGAGATCTGG GACGACGAAG CCTGGGAGGC GCTCACCGCG CTGAACGTCC GGCACACCCG GGCCTCCGGC GCGCTGACGA TGCTGCCGGT CGTGCTGACC CAGCGGATCG CCGCCTGTCT GCACGCCGGC CGGTTCCAGG ACGCGGCCGA CCTGCTCCAG GAGTCCGAAG CCGTCGCCGA GGCCACCGGC ATCGCGCGCC CCGCCTACGA CGCCGCCGCC GTGGCCGCCT GGCGCGGCGA CACTGAAGCA CACGCTCTCA TCCAGGCCGC GGAGGCCACC GCGGCCCAAC GCGGCGAAGG CCTCGGCGTC ACCCTGATCA ACTACACCAA CGCCGTGCTC CACAACGGCC TCGGCGCGTT CGAGCAGGCC AAGGACGCCG CAGCGCTCGC GGCGGCGAAC CTCACCGAGA CCGCCTTCGC CTCCTGGGCC CTGAGCGAGT GGATCGAGGC CGCGATCCGC TGCGGCGACC GAAACGAAGC CGAGCACGCC CTCGAGCGGC TGGCCCGAAC CACGACCCCG AGCGGGACCG CCTGGGGCGC AGGCATCGAG GCACGCTCCC GCGCCCTACT CGCCGAAGGC CCACCAGCCG ACGCCCTCTA CCGCGAAGCG ATCGACAAGC TCGGCCGCAG CCACGGCGTG GTCGCCCTAG CCCGCGCGCA CCTGCTGTAC GGCGAATGGC TGCGGCGCCA AGGACGCGAA CCCGACGCCC GCGCCCACCT GACCACCGCA CACACCACCT TCACCGACAT CGGCGCCCAA GCATTCGCCC ACCGAACCCG CGCCGAACTC ACCGCCTCCG GCATATCAGT CCCGCAGCCC ACCACAACCC CCACCGTGGA ACTGACAGAG CAGGAACGCC AAATCGCCCG CCGCGCCCGA GAAGGCCGCT CCAACGCCGA AATCGGCGCC GAACTCTTCC TCAGCGCCCG AACCATCGAA TGGCACCTCC GCAAAGTGTT CACCAAGCTC GGCATCAGCT CCCGCAAGGA GCTGCGCACG GCGCTGCCGT GA
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Protein sequence | MLVGRHAECA RLDALLTALR DGRSAALVVV GEAGVGKSAL LDHAVRSGTD VRVMRASGVE SEMELPYAAL HQLCLPLLDG INRLPTPQAD ALARIFGMRA GDVPSPFFVG LGILNLLADA AREQPLLCLV DDAHWLDEAS AQVLTFVARR LRAESILLVI ASRRAIPAMQ GLAELTVRGL GSEDAKQLLN SVLRWPMDDG VRAAILAEAR GNPLALLELP LASPDRLAGG YGFLEASALP GRIEESFRRR IAELPADCQD LLLLAAADST GDPVLVWRAA ASLGLSPEAA RPAAEVDLLA IGVRTAFRHG LVRSAVYRSA SAEARRRAHR ALAEATSAQA DPDRRAWHLA HATENQDEAV ALELEASADR AQSRGGLAAA AAFLERAASL TADPAVRADR ELAAAQAKYH AGAPEGARVL LDKVEAGPAD ELRSAQVRHL RAYMAFATGD SAQAPVLLLD TARRFERLDP VLSRENYLDA LAYALMAGRY ADRATVADVA AAALTAPSAG ADPHAPDQLL DAYAVLFTEG HAAGTALVRR ALDAFRRDEL PVAEATRWLV IAAHGAYEIW DDEAWEALTA LNVRHTRASG ALTMLPVVLT QRIAACLHAG RFQDAADLLQ ESEAVAEATG IARPAYDAAA VAAWRGDTEA HALIQAAEAT AAQRGEGLGV TLINYTNAVL HNGLGAFEQA KDAAALAAAN LTETAFASWA LSEWIEAAIR CGDRNEAEHA LERLARTTTP SGTAWGAGIE ARSRALLAEG PPADALYREA IDKLGRSHGV VALARAHLLY GEWLRRQGRE PDARAHLTTA HTTFTDIGAQ AFAHRTRAEL TASGISVPQP TTTPTVELTE QERQIARRAR EGRSNAEIGA ELFLSARTIE WHLRKVFTKL GISSRKELRT ALP
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