Gene Caci_5143 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5143 
Symbol 
ID8336497 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp5903912 
End bp5906623 
Gene Length2712 bp 
Protein Length903 aa 
Translation table11 
GC content72% 
IMG OID644958241 
Producttranscriptional regulator, LuxR family 
Protein accessionYP_003115843 
Protein GI256394279 
COG category[R] General function prediction only 
COG ID[COG3899] Predicted ATPase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.497829 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.980659 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGGTGG GGCGACACGC CGAGTGCGCG CGGCTGGACG CCCTGCTGAC GGCGTTGCGG 
GACGGTCGCA GCGCGGCGCT CGTGGTGGTC GGCGAGGCCG GTGTCGGCAA GAGCGCGCTG
CTGGACCACG CGGTGCGGTC CGGCACGGAC GTGCGCGTCA TGCGCGCCTC CGGTGTCGAA
TCGGAGATGG AACTCCCCTA CGCCGCCTTG CACCAGCTGT GCCTGCCGCT GCTGGACGGG
ATCAACCGGC TGCCGACGCC GCAGGCTGAC GCGCTGGCGC GGATCTTCGG CATGCGCGCC
GGTGACGTGC CGAGCCCGTT CTTCGTCGGA CTCGGCATCC TCAACCTGCT CGCTGACGCC
GCGCGCGAGC AGCCGTTGCT GTGTCTGGTG GACGACGCGC ACTGGCTCGA CGAGGCTTCG
GCGCAGGTAC TCACTTTCGT GGCACGTCGG CTGCGTGCCG AGTCGATCCT CCTGGTGATC
GCCAGTCGCC GCGCGATCCC TGCCATGCAG GGTCTGGCCG AGCTGACGGT CCGGGGTCTG
GGCTCGGAGG ACGCGAAGCA GCTGTTGAAC TCCGTGCTGC GCTGGCCGAT GGATGACGGC
GTCCGAGCGG CGATCCTTGC CGAGGCGCGC GGCAACCCGC TGGCGTTGCT GGAACTCCCG
CTGGCTTCGC CCGATCGCCT CGCCGGCGGC TATGGCTTTC TGGAGGCGTC GGCGTTGCCG
GGGCGGATCG AGGAGAGCTT CCGTCGGCGG ATCGCGGAGC TGCCCGCCGA TTGCCAGGAC
CTGCTGCTGC TCGCCGCCGC CGACTCGACC GGCGACCCGG TGCTGGTCTG GCGTGCCGCC
GCGAGCCTCG GGCTGAGTCC GGAAGCGGCG CGGCCGGCGG CTGAGGTGGA TCTGCTCGCG
ATCGGTGTGC GGACCGCGTT CCGCCACGGT CTGGTCCGCT CGGCTGTGTA TCGCTCGGCG
TCGGCGGAGG CCCGGCGGCG GGCGCACCGG GCTCTGGCTG AGGCGACGTC GGCTCAAGCC
GATCCGGACC GGCGTGCCTG GCATCTGGCG CACGCCACGG AGAACCAGGA CGAGGCTGTC
GCGCTGGAGT TGGAAGCCTC GGCGGATCGC GCGCAGTCCC GGGGCGGTCT GGCTGCGGCG
GCTGCGTTCC TGGAACGCGC GGCGTCGCTG ACGGCCGATC CGGCGGTGCG CGCCGATCGG
GAACTCGCCG CCGCGCAGGC GAAGTACCAC GCGGGGGCGC CGGAGGGTGC GCGTGTCCTG
CTCGACAAGG TGGAAGCCGG TCCTGCCGAC GAGTTGCGGT CCGCTCAGGT CCGACACCTG
CGCGCCTACA TGGCTTTCGC CACCGGGGAC TCCGCACAAG CGCCGGTTCT ATTGCTGGAC
ACGGCTCGGC GGTTCGAGCG GCTCGACCCG GTGCTCTCGC GCGAGAACTA TCTGGACGCC
CTCGCCTATG CGTTGATGGC CGGTCGCTAC GCCGACCGCG CGACCGTCGC GGACGTGGCC
GCCGCCGCGC TGACGGCGCC CTCGGCCGGC GCGGACCCGC ACGCTCCGGA CCAGCTGCTC
GACGCCTACG CCGTGCTGTT CACCGAAGGC CACGCCGCCG GGACTGCGCT GGTGCGGCGT
GCGCTGGACG CCTTCCGCCG CGACGAGTTG CCGGTGGCGG AGGCGACGCG CTGGCTGGTC
ATCGCCGCCC ACGGCGCCTA CGAGATCTGG GACGACGAAG CCTGGGAGGC GCTCACCGCG
CTGAACGTCC GGCACACCCG GGCCTCCGGC GCGCTGACGA TGCTGCCGGT CGTGCTGACC
CAGCGGATCG CCGCCTGTCT GCACGCCGGC CGGTTCCAGG ACGCGGCCGA CCTGCTCCAG
GAGTCCGAAG CCGTCGCCGA GGCCACCGGC ATCGCGCGCC CCGCCTACGA CGCCGCCGCC
GTGGCCGCCT GGCGCGGCGA CACTGAAGCA CACGCTCTCA TCCAGGCCGC GGAGGCCACC
GCGGCCCAAC GCGGCGAAGG CCTCGGCGTC ACCCTGATCA ACTACACCAA CGCCGTGCTC
CACAACGGCC TCGGCGCGTT CGAGCAGGCC AAGGACGCCG CAGCGCTCGC GGCGGCGAAC
CTCACCGAGA CCGCCTTCGC CTCCTGGGCC CTGAGCGAGT GGATCGAGGC CGCGATCCGC
TGCGGCGACC GAAACGAAGC CGAGCACGCC CTCGAGCGGC TGGCCCGAAC CACGACCCCG
AGCGGGACCG CCTGGGGCGC AGGCATCGAG GCACGCTCCC GCGCCCTACT CGCCGAAGGC
CCACCAGCCG ACGCCCTCTA CCGCGAAGCG ATCGACAAGC TCGGCCGCAG CCACGGCGTG
GTCGCCCTAG CCCGCGCGCA CCTGCTGTAC GGCGAATGGC TGCGGCGCCA AGGACGCGAA
CCCGACGCCC GCGCCCACCT GACCACCGCA CACACCACCT TCACCGACAT CGGCGCCCAA
GCATTCGCCC ACCGAACCCG CGCCGAACTC ACCGCCTCCG GCATATCAGT CCCGCAGCCC
ACCACAACCC CCACCGTGGA ACTGACAGAG CAGGAACGCC AAATCGCCCG CCGCGCCCGA
GAAGGCCGCT CCAACGCCGA AATCGGCGCC GAACTCTTCC TCAGCGCCCG AACCATCGAA
TGGCACCTCC GCAAAGTGTT CACCAAGCTC GGCATCAGCT CCCGCAAGGA GCTGCGCACG
GCGCTGCCGT GA
 
Protein sequence
MLVGRHAECA RLDALLTALR DGRSAALVVV GEAGVGKSAL LDHAVRSGTD VRVMRASGVE 
SEMELPYAAL HQLCLPLLDG INRLPTPQAD ALARIFGMRA GDVPSPFFVG LGILNLLADA
AREQPLLCLV DDAHWLDEAS AQVLTFVARR LRAESILLVI ASRRAIPAMQ GLAELTVRGL
GSEDAKQLLN SVLRWPMDDG VRAAILAEAR GNPLALLELP LASPDRLAGG YGFLEASALP
GRIEESFRRR IAELPADCQD LLLLAAADST GDPVLVWRAA ASLGLSPEAA RPAAEVDLLA
IGVRTAFRHG LVRSAVYRSA SAEARRRAHR ALAEATSAQA DPDRRAWHLA HATENQDEAV
ALELEASADR AQSRGGLAAA AAFLERAASL TADPAVRADR ELAAAQAKYH AGAPEGARVL
LDKVEAGPAD ELRSAQVRHL RAYMAFATGD SAQAPVLLLD TARRFERLDP VLSRENYLDA
LAYALMAGRY ADRATVADVA AAALTAPSAG ADPHAPDQLL DAYAVLFTEG HAAGTALVRR
ALDAFRRDEL PVAEATRWLV IAAHGAYEIW DDEAWEALTA LNVRHTRASG ALTMLPVVLT
QRIAACLHAG RFQDAADLLQ ESEAVAEATG IARPAYDAAA VAAWRGDTEA HALIQAAEAT
AAQRGEGLGV TLINYTNAVL HNGLGAFEQA KDAAALAAAN LTETAFASWA LSEWIEAAIR
CGDRNEAEHA LERLARTTTP SGTAWGAGIE ARSRALLAEG PPADALYREA IDKLGRSHGV
VALARAHLLY GEWLRRQGRE PDARAHLTTA HTTFTDIGAQ AFAHRTRAEL TASGISVPQP
TTTPTVELTE QERQIARRAR EGRSNAEIGA ELFLSARTIE WHLRKVFTKL GISSRKELRT
ALP