| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_5139 |
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| Symbol | |
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| ID | 8336493 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 5897869 |
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| End bp | 5899428 |
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| Gene Length | 1560 bp |
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| Protein Length | 519 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644958237 |
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| Product | drug resistance transporter, EmrB/QacA subfamily |
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| Protein accession | YP_003115839 |
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| Protein GI | 256394275 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.306727 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGAAGA TCCGGCAGTT TTCCGAAAGC AGGCAGGTTT CCACGGCTCG GCCGACAGGT
GTGGCCGCGG CGATGAGTGC GCTGGTGCTG GCCGTGCTGC TCGCGTCGTT GGACCAGACG
ATCGTCTCCA CCGCGTTGCC GCGGATCGCT GAGGATCTGA ACGGCTTCGA CGACATCGCG
TGGGTCAGCG CCGCGTATCT GCTGGCCTCG ACCGCGGTCA CGCCGCTGTG GGGGAAGCTC
GGCGACATGT TCGGGCGCAA GCGGCTCTAT CTGGCGGCGA CGTCGACGTT CCTCATCGCC
TCGGTGGCGT GCGGGGTGGC GCAGAATCTG GCCGAGCTGA TCGGCGCCCG GGTGCTGCAG
GGTGTGGGGG GCGGCGGCAT GATCGTGCTG ACCTTCGCGC TGGTCGGCGA CATCGTCCCG
CCGGCCGATC GCGGCCGGTA CCAGGGCATG TTCGGGTCGG TCTACGGCGT GGCCAGCATC
GTCGGGCCGC TGCTCGGCGG GATCTTCACC GACCACCTGT CCTGGCGGTG GGCGTTCTTG
ATCAACCTGC CGGTCGGGCT GGTCGCCCTG GTGATCGCGG CGCGGGCACT TCCGAAGGCG
ACGCGCGGAG CCAAGGCGCG CATCGACTAT CTCGGTTCGC TGATCCTGGC TGCGATAGCC
ACCGGTCTGG TGCTGGTCAC CTCCTTCGGC CAGCGCTGGG GCTGGGGTTC GCCGGGCATC
GTCGGGCTCA TCCTTGCGAC CGTCGCCCTG GCCGCCGTGC TGATCCCGGT CGAGCGCCGC
GCCGCCGCGC CGGTGCTGCC GCCGGCGATG CTCGGCTCGC GGACCGTCGT CTTCTCCTCG
CTGATCGCCT TCTTCGCCAA CGCCGCGATG TTCTCGGTGC TGGTGTATCT GCCGACCTAC
CTGCAGATCG TGCACGGCGT CTCGGCGACG CTGTCCGGAA TCTCGATGCT GCCGCTGGTC
GCCGGGTTGG TCGTCAGCCA GTCCCTCGCC GGACGCTGGG CCGCGCACGT CGAACGCCTG
CGGGTCATCC TGCTCGCGGG TCTGGCGGCG AACCTGGCCG GGCTGCTTCT GCTGGGCACC
ATCGGCGGCG CCACCAGCAC TGTGCTGCTG AGCGTCTACT TCCTGATCAC CGGAATCGGC
ATCGGCATGG TCCCGATGGT GGTCCTGACG ACCGTTCAGA ACAGCGTGCC GGCCGGCGAT
CTCGGCGCCG CCAGCGCGGT GGTCACCTTC GCGCGCTCCA TCGGCGCCGC GTTCGGCGTC
GCGGTCTTCG GCACTTTGCT CAACACCGGC TTCGCCACCG GCACCCGCGG CCTGCCGAGC
GCCGGCGGCT TCGACGCCGC CCGCCCCGAC AGCATCGCTC ACCTGCCGGT CGGGCTGCGC
CACAGCGCAT TGGACGCTTT CGCGCACGCG ACCGCCAACG GCTACCTGTG GATCGCACCC
GCGTTGGCGG TCGGCATCGG GCTCGCGCTG TTCCTGAAGC CCGCCTCGAA GATCGCGTCG
GCGGATGACA AGGTTGACTA CGCACTCGCC GCAGCCGACG ACCTGCGCGC GGCTGCCTGA
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| Protein sequence | MPKIRQFSES RQVSTARPTG VAAAMSALVL AVLLASLDQT IVSTALPRIA EDLNGFDDIA
WVSAAYLLAS TAVTPLWGKL GDMFGRKRLY LAATSTFLIA SVACGVAQNL AELIGARVLQ
GVGGGGMIVL TFALVGDIVP PADRGRYQGM FGSVYGVASI VGPLLGGIFT DHLSWRWAFL
INLPVGLVAL VIAARALPKA TRGAKARIDY LGSLILAAIA TGLVLVTSFG QRWGWGSPGI
VGLILATVAL AAVLIPVERR AAAPVLPPAM LGSRTVVFSS LIAFFANAAM FSVLVYLPTY
LQIVHGVSAT LSGISMLPLV AGLVVSQSLA GRWAAHVERL RVILLAGLAA NLAGLLLLGT
IGGATSTVLL SVYFLITGIG IGMVPMVVLT TVQNSVPAGD LGAASAVVTF ARSIGAAFGV
AVFGTLLNTG FATGTRGLPS AGGFDAARPD SIAHLPVGLR HSALDAFAHA TANGYLWIAP
ALAVGIGLAL FLKPASKIAS ADDKVDYALA AADDLRAAA
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