Gene Caci_5132 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5132 
Symbol 
ID8336486 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand+ 
Start bp5891392 
End bp5892027 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content71% 
IMG OID644958230 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003115832 
Protein GI256394268 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.60522 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCACCA TGGACCCGAC GCCCGAACCC CCAGGCGGCA CCCGGAATCG CAACCCGCGC 
GGCAAAGGCG AGCAGCTGCG CGCGGACATC GTCGCCGCGG CCGTGCGCAT GCTCGACGAA 
CTCGCCGACG ACCAGGCGCT GTCGCTGCGC GCGGTGGCCC GGGAGGTCGG CATCGCCGCG 
ACGTCGGTCT ACATCCACTT CGCCGATCGC GACGCCCTGG TCCTGGCGGC CTTGGAGCAG 
TGCCTGCTCG ACCAGGTCGC GGCCATCGAG GAGGCGGAGG AAGCCGCCAC CGACCCGGTG 
GCCAAGCTGC GCGCGCGCAC CCTGGTGCTG GGCGACTGGG CGTATCAGCA CCCTGGTTTG 
TACAAAGTCC TCCACGAGAG CACGCTGAAC CAGCGCTCGG CCATGGCGTT CAAGGCGAAG 
CTGTTCGAGG GCACGACCAT CGCCGTCCGC CGCTGCATGG ACGCCGGACT CGCGCCGGCC 
GACGACGTGG ACGCGGTCTC GCTGGATCTG CGGGCGGCCG TGCACGGCAC CGTCTCGATG 
CGCGTCAACC AGCCGGATCT GCCGTGGCCG CCGCTGGAGG AGCAGGTCGA CCGGTTCCTG 
GTCAAGCTCG TCGGGGTCGC TGCCCCATCG TCATGA
 
Protein sequence
MGTMDPTPEP PGGTRNRNPR GKGEQLRADI VAAAVRMLDE LADDQALSLR AVAREVGIAA 
TSVYIHFADR DALVLAALEQ CLLDQVAAIE EAEEAATDPV AKLRARTLVL GDWAYQHPGL 
YKVLHESTLN QRSAMAFKAK LFEGTTIAVR RCMDAGLAPA DDVDAVSLDL RAAVHGTVSM 
RVNQPDLPWP PLEEQVDRFL VKLVGVAAPS S