Gene Caci_5021 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5021 
Symbol 
ID8336375 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp5751771 
End bp5752448 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content71% 
IMG OID644958120 
Productpeptide deformylase 
Protein accessionYP_003115722 
Protein GI256394158 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0242] N-formylmethionyl-tRNA deformylase 
TIGRFAM ID[TIGR00079] peptide deformylase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.106509 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTCGCGC GCCCTGGCTC CACCGCGAAG CAGGTCCTGG TGCAGGGCCG GCCGGTGGAC 
GGCTACCCCG CCCTGGCTCC TGAGGCGGCT CGCGGCAAAG AGCTCAGGGT GACCGTGGTG
GGCGAAGAGG TCCTGCACCG GCCGTGCCGT GAGGTGGCCG AGTTCGGGAC GGCGGAACTG
CTCCAGCTCG TGGACGACAT GTTCTTGACC ATGTACGTCG CGCAGGGCGT CGGCCTGGCG
GCCAACCAGG TCGGCGTGGA CCTGCGGGTG TTCGTCTACG ACTGCGTCGA CGACGACGGC
GCGCGCCACG TCGGGCACAT CGTGAACCCC AAGCTGGACC GCACGCCCGA GGGCGGGCAG
CGCCGGCTGG TCGAGGCGCA GGAAGGCTGC CTGTCCGTCC CCGGCCCGAC CCGGGAGCTG
CCCCGCTACG ACCACGCCGT CCTGCACGGC GTGGACGTCC ACGGCGAACC CCTGGTCCTC
GAAGGCGAGG GATACTTCGC CCGGTGCCTC CAGCACGAGA CCGACCACCT CGAGGGCACC
CTGTACATCG ACCGGATGAA CAAGAAGACG CGGCGCGGCG TGCTGGAGGA GATGGCCGAG
GTCGCCGACG GTGTCTTCGC CGAACGCAAG ACCCGCGCCG AGGAACTGCG CGAGCACTTC
GCAACCCCGA GCGAGTGA
 
Protein sequence
MVARPGSTAK QVLVQGRPVD GYPALAPEAA RGKELRVTVV GEEVLHRPCR EVAEFGTAEL 
LQLVDDMFLT MYVAQGVGLA ANQVGVDLRV FVYDCVDDDG ARHVGHIVNP KLDRTPEGGQ
RRLVEAQEGC LSVPGPTREL PRYDHAVLHG VDVHGEPLVL EGEGYFARCL QHETDHLEGT
LYIDRMNKKT RRGVLEEMAE VADGVFAERK TRAEELREHF ATPSE