| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_5011 |
|---|
| Symbol | |
|---|
| ID | 8336365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 5739300 |
|---|
| End bp | 5740067 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644958110 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003115712 |
|---|
| Protein GI | 256394148 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.24255 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACGAAC AGACCTGTCA CCGCTTCACC GACCGGGTCG CCGTGGTGAC CGGAGCGGCC
GGCGGCATCG GCGCGGCCAC CGCCCGGCGC CTGGCGGCCG AGGGCGCGGC GGTGATCGCC
GTGGACATCG CCGACGACGC CGGGCGCGCC GTGGCCGAGG AGATCACCGC CTCCGGCGGC
CGGGCCGAGT ACCGGTCCGG CGACGTGGCC AGCGCCGCGG CGTGGGACGC GCTGGCCGAG
CACGTCCAAG GCCGCTACGG GCGCCTGGAC GTACTGCACA GCAACGCCTA CAAGGTGGTC
GTCAAACCGG CCCACGAACT CACCGAGCCC GAATGGGACG GCCAGCTCGC CGTCACGCTC
AAAGCGGCCT GGCTCGGCGT GCGCGCCTTC GCCGGTATGC TCGGCGAATC TCAGGGTTCG
ATCGTGCTCA CCTCGTCGGT CCACGCGCTG GTCGGCCTGC CCGGCCATCC CGCCTACGCC
GCGGCGAAGG GGGCGCTGTG CGCGCTGGGG CGGCAGCTGG CTGTCGAGTA CGGCCCGCGG
GTGCGCGTCA ACACGGTCCT GCCCGGCCCG ATCCTGACCG CCGCGTGGGA CCGCGTCGAC
GCCGAGCGGC GGGCGGCCAG CGTCTCCGAG ACGGTCGCCG GGCGGTTCGG GCGCCCCGAG
GAGGTGGCCG CGGCGGTGGC GTTCCTGGCC TCGGCCGACG CCTCCTTCGT GACCGGCGCG
AACCTGGTCG TGGACGGCGG CTGGTCCGTC GTCAAAGCTT CGTCATGA
|
|---|
| Protein sequence | MNEQTCHRFT DRVAVVTGAA GGIGAATARR LAAEGAAVIA VDIADDAGRA VAEEITASGG
RAEYRSGDVA SAAAWDALAE HVQGRYGRLD VLHSNAYKVV VKPAHELTEP EWDGQLAVTL
KAAWLGVRAF AGMLGESQGS IVLTSSVHAL VGLPGHPAYA AAKGALCALG RQLAVEYGPR
VRVNTVLPGP ILTAAWDRVD AERRAASVSE TVAGRFGRPE EVAAAVAFLA SADASFVTGA
NLVVDGGWSV VKASS
|
|---|
| |