| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_5002 |
|---|
| Symbol | |
|---|
| ID | 8336356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 5726282 |
|---|
| End bp | 5727586 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644958101 |
|---|
| Product | Carbohydrate binding family 6 |
|---|
| Protein accession | YP_003115703 |
|---|
| Protein GI | 256394139 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.173534 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.970629 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGACGAC CACTGCTGTC CCGTCTGATA CCTGCTGTGG TGCTCGTCGT CGCCACGACG
GGTGCCGTGG CCGGTCAGAG CGCTGCGAAG GCCGCCGGCG TGGTACCGGG GTTGACCGGA
GCGGCGGCGC GACAGGCCGC CGGTCCCGCG GCCGATCGGT TCCGGCAGCT CACCGAGCAG
CGCGTCCAGG CGGCTGCGGC CGGGCACGGC GCGGCTTCGT CCGCGGCCGC CACGCTGCAC
ACCAGCTGGG GCATCACGAT GCCGGTCGGC GTCGGCACCG GTTTCAAAGC CCTGCAAAGC
GTGGTCGGCG GAGCCCAGCC GACGAACGGC GGCGACTTCG TCTACGCCCC GACGGCGCTG
CCGCCCGGCC GCGCGTGCAT GGAGATCACC ACCGCCTACA CGCCCAGCGG CCCGGATCTG
TGGGCCTGGG ACTGGTGCGG CGGACGCGAT CAGGTCGGCA AGCTCACGGC GATGGACTCG
ACCTTCCTGG CCACCTACAC CACCACGGTC AACGGTCACC CCGCCTACGA CCTCGACGAG
CACCAGACCT CGGCCTCGGG CAACGTCTGG ACCGCGTACC TGTACAACTA CCAGACCCAC
GCCTGGGACA CCTTCTACAC CAGCTCCGGT ACCTACGACC TGTCGCAGTA CCCCTTCGGC
TGGGACATGT TCGAGGTCTA CACCACCCCC GATCCGGGCA CCGGCGCCGG CTACTACTGC
CACGACCTGC TCGGCAAGCC CTTCGAGAGC AGCAGCGTCC AGCTCCTGAC CGGCAGCACC
TGGACTCCCG CGGCGCCCGG CAACAGTTCC CCCGACAGCA CGCCGCCCGC ACCCGGCAGC
AGCCTGGACT GTCCCGCCCT GACCATCACC CTGGCCCACC CGAACGACGA CTGGACCGCC
CTGATCGGCG GCACCAGTGG CAGCTCGCAG TCCTACGAAG CCGAAGCCGC CGGCAACACG
CTGGCCGGTC AGGCCGCGGT CCGCAGCTCC TCCGGCGCTT CCGGCGGCGC CCTGGTCGGC
TACATCGGGA ACGGCACCGC GAACTACCTC CAGGTCAACA ACGTCTCGGC CACCACGGCC
GGCAGCCACC GCCTGACGAT CTACTACGCC GCCGGCGAGA ACCGCTCGCT CACCGTCAGC
ATCAACGGCG GCGCCGCGAC CAGCCTGACC ACCCCCGGCA CCGGCGGCTG GGACACCGTC
GGATCGGTCG CCACGACCGT GACCCTGACC GCGGGCACGA ACACCGTACG GATCGGCAAC
CCGACCGGCT GGGCGCCGGA CGTGGACCGC ATCGTCGTGT CCTGA
|
|---|
| Protein sequence | MRRPLLSRLI PAVVLVVATT GAVAGQSAAK AAGVVPGLTG AAARQAAGPA ADRFRQLTEQ
RVQAAAAGHG AASSAAATLH TSWGITMPVG VGTGFKALQS VVGGAQPTNG GDFVYAPTAL
PPGRACMEIT TAYTPSGPDL WAWDWCGGRD QVGKLTAMDS TFLATYTTTV NGHPAYDLDE
HQTSASGNVW TAYLYNYQTH AWDTFYTSSG TYDLSQYPFG WDMFEVYTTP DPGTGAGYYC
HDLLGKPFES SSVQLLTGST WTPAAPGNSS PDSTPPAPGS SLDCPALTIT LAHPNDDWTA
LIGGTSGSSQ SYEAEAAGNT LAGQAAVRSS SGASGGALVG YIGNGTANYL QVNNVSATTA
GSHRLTIYYA AGENRSLTVS INGGAATSLT TPGTGGWDTV GSVATTVTLT AGTNTVRIGN
PTGWAPDVDR IVVS
|
|---|
| |