| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4959 |
|---|
| Symbol | |
|---|
| ID | 8336313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 5663572 |
|---|
| End bp | 5665302 |
|---|
| Gene Length | 1731 bp |
|---|
| Protein Length | 576 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644958058 |
|---|
| Product | Ricin B lectin |
|---|
| Protein accession | YP_003115660 |
|---|
| Protein GI | 256394096 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.572354 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.851755 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGCACC GCCTGATGCA CCATGCCACT GCCCGCCGGG CGCGAGCCGC GATCGCCGCC
TTGGCCTTGG TCACCGCGGC GGCGACAGCC GTGAGCACCG CCCCCGCCCA CGCGGCGACG
CCCACGCTCC AAGTGAACGC CAACCAGCCG TTCCGCACGG TCACCCATGT GGCGACCGGG
TCGCTCTACG GTCTGGCCAC CGCGACCGTT CCGGCCGACA ACCTGGTCGA GCCGCTGCAC
CCGAACACCT TCGTCCAGAT GCCCGCCGGC GGGCACCAGC AGGGCTCCGG CGACATCCTG
AAGGTGGCTC CGGAGGCCGC CAGGGCCGGA GCCAAAGTGG TCGACCGGCT GTCGGACTAC
TACGCGGGAT GGCCGTACCA GTTCAGCTGG AGCACCTGGT CCGGCGCCGT GCAGAGCCAG
ATCCAGCAGG TCCAGGCCTC CGGCATCACG AATCTGGCCG CTTACGCGCT GTGGAACGAG
CCGGACGGCA CCTGGCAGTC CGCCAACGGC ACGTTCGAGA ACTTCTGGAC CACGACCTAC
CGGCAGGTCC GCTCCCTGGC GCCGAACGTC CCGATCCAAG GGCCGAGCTT CTCGGACAAC
ATCAGCGACA TGCAGAACTT CCTGAACAAC GCGGTCGCCA CCAACACCGT GCCGGACATC
ATCGCCTGGC ACGAGCTGGA GAACTCCTCG AAGATCGCCG GTGACGTGGC GACCGTGACG
AACCTGGAGA AGAACCTGGG GATCACCCCG CGGCCGATCG CCATCGAGGA GTACGCCGCG
CCCTCGCAGG TGGGCGTGCC CGGAGCCCTG GTGGGCTACC TCGCGCAGTT CGAGCGGCTC
GGGGTGAACA ACGCCGAGCT GGCGTTCTGG AACCAGTCCG GAGCGCTCGG CGACCTGCTG
ACCGGGCAGG GCGGCAGCCC CAACGGCGCG TATTGGCTGT ACACCTGGTA CGCGGGGATG
ACCGGGAACA TGGTCACCAC CGTGCCCTCC GGCGGTCTCG ACGGTGTGGC GTCGGTCCCC
GCGGCGGGCA ATCAGGTCAA CGTGGCGTTC GGCGGAGGCA GCGGCTCCAC CGCGGTCACC
GTCAACGGGC TGGGATCGCT GTCCGGGTTC TCCGGCAGCT CCCAGGTGAC CGCGAGCCTG
CAGTACACGC CCTCCCCCGG GCGCACCGTC GCGGTGTCGG GACCGACGAC CCTCTCGCAG
GGCACGTACC AGGTGGTCAA CGGATCGGTC ACCATACCGG TCTCGATGAC CTCCACCTAC
GGCTACCACC TGGTCCTCAC CCCCGGCGGC GGCGGATCGC CGACGCTGGA TGGCACCTAC
CAGATCAAGA ACGTGAACAG CGGCCTGGCC CTGGACACGC AGAACGGCGG CACCGCGCAG
GGCACCCTGG CCGTCCAGGC CACCCCCGGC AGCGGCAGCA CCCAGACCTG GAAGCTCATC
TCGGCCGGGT CGGGCCTGTA CAAGATCCAG AACACGGCCG ACGGCCTGCT GCTCGGCGTC
ACCAACGAGA GCACCTCCGC CGGAGCCGAC GCCCTGATCT GGGGCGACAA CGGCACCCCG
GACCACCTCT GGTCGGTCAA CGCCGCGGGC AACGGCCAGT ACAAGATCGC CAACAGCCAC
AGCGGACTCC TGCTGGGCGT CACCAACATG AGCAAGTCCT CCGGCGCGCT GGTCCTGCAG
TGGAGCGACA ACGGCACGGC CGACCACCTG TGGACGCTGA ACGCACGCTG A
|
|---|
| Protein sequence | MTHRLMHHAT ARRARAAIAA LALVTAAATA VSTAPAHAAT PTLQVNANQP FRTVTHVATG
SLYGLATATV PADNLVEPLH PNTFVQMPAG GHQQGSGDIL KVAPEAARAG AKVVDRLSDY
YAGWPYQFSW STWSGAVQSQ IQQVQASGIT NLAAYALWNE PDGTWQSANG TFENFWTTTY
RQVRSLAPNV PIQGPSFSDN ISDMQNFLNN AVATNTVPDI IAWHELENSS KIAGDVATVT
NLEKNLGITP RPIAIEEYAA PSQVGVPGAL VGYLAQFERL GVNNAELAFW NQSGALGDLL
TGQGGSPNGA YWLYTWYAGM TGNMVTTVPS GGLDGVASVP AAGNQVNVAF GGGSGSTAVT
VNGLGSLSGF SGSSQVTASL QYTPSPGRTV AVSGPTTLSQ GTYQVVNGSV TIPVSMTSTY
GYHLVLTPGG GGSPTLDGTY QIKNVNSGLA LDTQNGGTAQ GTLAVQATPG SGSTQTWKLI
SAGSGLYKIQ NTADGLLLGV TNESTSAGAD ALIWGDNGTP DHLWSVNAAG NGQYKIANSH
SGLLLGVTNM SKSSGALVLQ WSDNGTADHL WTLNAR
|
|---|
| |