Gene Caci_4936 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4936 
Symbol 
ID8336290 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp5634322 
End bp5635302 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content67% 
IMG OID644958035 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_003115637 
Protein GI256394073 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0395] ABC-type sugar transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00903447 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGCAC TGTCTACCGC CTCCGCACCC GGTCGGCGCG AGCCTCCGTC CGGCAACGTC 
CCCCGCGAGC GGGCCAAGGG CCGCGCGGTC TGGGAGGAGC GCCCGACCCT GGTCGGGCAG
TTCGGCAAGG GCGTGGTCCT CACCGTCGTC GTATTGGCCG TGGTCCTGCC GCTGTACGCC
ATCATTCTGA CCAGCTTCTC CAGCGAGGGC GCCATCACCC GGGCCGGCGG CAGCCTGGTC
GTGGTGCCGG ACGGGCTGAG CCTGAGCGCC TACCGGGAGA TCTTCTCCAA CGGCGTGGTC
ACCCGCGCCG TGGTGGTCAG CGTCGGGATC ACGGTCGTGG GCACCGCGGT GTCGATGGTC
CTGAGCATCC TGTGCGCCTA CGGGCTGTCC CGGGTCCGCT CGTTCGGCCA CCGGTTCTTC
CTGGGCGCGA TGATCTTCAC GATGTTCTTC GGCGGCGGTC TGATCCCCGG CTTCCTGGTG
GTCACCTCTC TCCACGGCTA CGACAATTAC TGGGCGCTGA TCCTGCCCAG CTGTCTGTCG
GTCTTCAACA TCCTCATCAT GCGGGGCTTC TACCAGGCCA CCGCCCAGGA GATGATCGAC
GCCGCGCGGA TCGACGGCGC CGGGGAGTGG CGCATCCTGT GGTCGGTGGT GCTGCCCACG
ACCAAGGCGG TGACCGCGGT GATGACCCTG TTCTATGCCG TCGGCTATTG GGGTTCGTGG
TTCAACACCC TGCTGTACAT GCCGTTCGAC AACAACAAGT GGTCGCTGTC CTACGTGCTC
TACGAATACG TCAACCTCGG CGCGAAGATG CCGGGCGTCG GCACCGCCGG TGCCGGCGAC
ACGGTCCAGC ACCAGGTCGC CTCGCCGTTC GGAATCTCCA TGGCCGTGGT CGTGCTCACG
CTCATCCCGA TCCTGGCCGT CTACCCCTTC CTGCAGAAGC ACTTCACCAA GGGCATGCTC
ACCGGCGCCA TCAAGGGCTG A
 
Protein sequence
MSALSTASAP GRREPPSGNV PRERAKGRAV WEERPTLVGQ FGKGVVLTVV VLAVVLPLYA 
IILTSFSSEG AITRAGGSLV VVPDGLSLSA YREIFSNGVV TRAVVVSVGI TVVGTAVSMV
LSILCAYGLS RVRSFGHRFF LGAMIFTMFF GGGLIPGFLV VTSLHGYDNY WALILPSCLS
VFNILIMRGF YQATAQEMID AARIDGAGEW RILWSVVLPT TKAVTAVMTL FYAVGYWGSW
FNTLLYMPFD NNKWSLSYVL YEYVNLGAKM PGVGTAGAGD TVQHQVASPF GISMAVVVLT
LIPILAVYPF LQKHFTKGML TGAIKG