| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4932 |
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| Symbol | |
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| ID | 8336286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 5627728 |
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| End bp | 5629719 |
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| Gene Length | 1992 bp |
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| Protein Length | 663 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644958031 |
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| Product | Alpha-L-fucosidase |
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| Protein accession | YP_003115633 |
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| Protein GI | 256394069 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3669] Alpha-L-fucosidase |
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| TIGRFAM ID | [TIGR01586] cysteine protease domain, YopT-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00307055 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCTCCT CTCCTCACCC CATCAGCCGC CGCTCCCTCC TCGCCGCCGG AAGCGCCGGC
ACAGCCGCCG CGTTCGGCCT GCTGCGTTTT GCCCCCTCCG CGTCCGCCAC CGTCGGCCCG
CAGAGCTACA CGGCCGCCTG GCCGTCGGTG GATCAGCACC CGCCGGCGCC CGAGTGGTTC
CAGGACGCCA AGTTCGGGAT CTACTACCAC TGGGGCGTGT TCTCCGTCCC CGCCTTCGGC
AACGAGTGGT ACCCGCGCAA CATGTACAAC TCGGGCTCGG CCGAGAACCA GCACCACATC
GCCACCTACG GGGACCCGTC GGTGTGGCCG TACCACAACT TCATCCTCGG GGCAAACGAC
AAGTCGGGCC ACTTCACCAA GTTCGCGCCC AAGCTGACCT CCGCCGGCGG CAGCTGGGAT
CCGAACGCCT GGGCCCAGCT GTTCAAGAAC GCCGGCGCGA GGTTCGCCGG TCCCGTGGCC
GAGCACCACG ACGGCTACTC GATGTGGAAC AGCCAGGTCA ACGAGTGGAA CTCGGTGAAG
ACCGGTCCGA ACCTGGACCT GGTGAACCTG CACGCCCAGG CGATCCGCGC GCAGGGGTTG
AAGTTCATGA CCTCCCTGCA CCACGCCTAC CACTTCCAGG GCTACTACCA GTACGTCCCC
CAGCAGTCGA CCGCCACGCT GCAGAAGCTG TACGGGCAGA CGGGGACCAC GGCAGAGAAC
CAGCTCTGGT ACAACAAGCT GGTCGAGGTG ATCAACGGCT ACCAGCCGGA CCTGATCTGG
CAGGACTTCG ACCTGAACGG CGTCCAGGAA TCCGAGCGCC TGGCCTTCCT GTCGTACTAC
TACAACAAGG CCGTGTCCTG GAACAAGGAC GTCGTGGCCA CCTACAAGGA CGGCTTCGAC
ACCTCCGGCG AGGTCTTCGA CTTCGAGCGC GGCGGTCCCG GCGGCCTGCT CACGCCGTAC
TGGCTCACCG ACGACTCCAT CTCCTCCTCC AGCTGGTGCT ACACCGTCGG CATCGGCTAC
TACACCGGCC AGGCACTGCT GCACGCGCTC ATCGACCGGG TGGCCAAGGG CGGCAACATG
CTGCTGAACA TCGCCCCGAT GGCCGACGGC ACCATCCCCT CGGGCCAGCA GAGCCTCCTG
CTCGGCATGG GCGACTGGCT CGGCCGCTTC GGCGAGGCGA TCTACGCCAC CCGCGCGTGG
ACCTCCTACG GCGAGGGTCC CACCGCGATG GGCGGCGGGT CCTTCTCCGG CCCGAAGGCG
GGCACGCCGC AGGACGTCCG CTTCACCCGC AGCAAGGACA ACACTGTCCT GTACGCCACC
GCCCTCGGCT GGCAGGGCAG CACCATGACG GTCACCACGC TGAACTCCAA CCAGATCAAT
CTCAGCACCC TGGTCTCCGC GCAGCTGCTG AACAACGCCG CGGGGACCTA CGTCAACCTG
CCCTCCCCGG TCCAGGACTC CGGCGGCCTG CACTTCTCGA TGCCCTCGTC CAACGCGCCC
TTCTCAGCCC TGGCCTACAC GGTCAAACTG ACCTTCTCCG GCCAGATCCC GACCCTGGGC
GGCGGCGGAT CCGTCCCGAC CGGCTGGTCG AAGATCGTCA ACGGCGCCAC CGGCCTGGTC
CTGGACAGCG GCGGCAGCGT CGCCTCCGGC TCGAACCTGA AGCAGTGGAA CTACGACGGC
AGCACCAACC TGCAGTGGCA GCTCGTGCCG CTCGGCGGCG GCTACTACCG CATCGTCAAC
AACACCAACG GCATGGTCGC CGACAGCTGG GGCAACACCG CCAACGGCGC ACCGGCCCGC
CAATCCGCCT GGAACGGCGG CAACAACCAG CAATGGAGCC TCACCAGCGC CGGCAGCGGG
CGCTACCACA TCGTCAACCG AGGCACCGGC ACCGCGCTGG ACGGCTCCGG CAGCACCACG
GCGGGTTCCA CCGCCGTCCT GTGGAGCCCC AACTCCAGCC CCAACAACGC GTGGTCGATC
GTCGCGATCT GA
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| Protein sequence | MSSSPHPISR RSLLAAGSAG TAAAFGLLRF APSASATVGP QSYTAAWPSV DQHPPAPEWF
QDAKFGIYYH WGVFSVPAFG NEWYPRNMYN SGSAENQHHI ATYGDPSVWP YHNFILGAND
KSGHFTKFAP KLTSAGGSWD PNAWAQLFKN AGARFAGPVA EHHDGYSMWN SQVNEWNSVK
TGPNLDLVNL HAQAIRAQGL KFMTSLHHAY HFQGYYQYVP QQSTATLQKL YGQTGTTAEN
QLWYNKLVEV INGYQPDLIW QDFDLNGVQE SERLAFLSYY YNKAVSWNKD VVATYKDGFD
TSGEVFDFER GGPGGLLTPY WLTDDSISSS SWCYTVGIGY YTGQALLHAL IDRVAKGGNM
LLNIAPMADG TIPSGQQSLL LGMGDWLGRF GEAIYATRAW TSYGEGPTAM GGGSFSGPKA
GTPQDVRFTR SKDNTVLYAT ALGWQGSTMT VTTLNSNQIN LSTLVSAQLL NNAAGTYVNL
PSPVQDSGGL HFSMPSSNAP FSALAYTVKL TFSGQIPTLG GGGSVPTGWS KIVNGATGLV
LDSGGSVASG SNLKQWNYDG STNLQWQLVP LGGGYYRIVN NTNGMVADSW GNTANGAPAR
QSAWNGGNNQ QWSLTSAGSG RYHIVNRGTG TALDGSGSTT AGSTAVLWSP NSSPNNAWSI
VAI
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