Gene Caci_4920 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4920 
Symbol 
ID8336274 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp5609724 
End bp5610419 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content72% 
IMG OID644958019 
ProductGntR domain protein 
Protein accessionYP_003115621 
Protein GI256394057 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.774759 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCCTGT CCGACAAGGC GATCACCCGT ATCCGAGAGC TCATCCAGTC CGGCCAGCTG 
CCCCCCGGAT CCCGGCTCCC TCCGGAGCAG CAGCTCGCCG CCGAACTGGG CCTGTCCCGG
AACCTGACCC GCGAGGCGGT CAAGGCGCTG GTGGTGGCCC GGGTGCTGGA GATCCGGCGC
GGCGACGGAA CCTATGTGAC CAGCCTGGAG CCGGCGGTCC TGCTCGAGGG CCTCGGCTCG
GCCGTCGAGC TGCTGCAGGG CGACACCCAG CTGGAGCTCG CCGAGGTGCG CAGACTCTTC
GAGCCGGTCG CCACCGGCGT GGCGGCCGTG CGGATCACCG CCGCCGAACT CGCCGAGGTC
CAGGGCCACC TGGCGGCGAT GTACGCCGCC AAGGACGACG TCGAGCTGTT GAACCAGCAC
GACGCGGCGT TCCACCGCGC CGTGATCGCC GCGACCGGCA ACCAGACCCT CACCTCCCTG
CTGGAGGGCA TCTCCCAGCG GACCGTGCGG GCCCGGGTCT GGCGCGGCAT GGTCGACGAC
GCCGTCGCCG ACAGCACCGT CGCCGAGCAC CAGGCGATCT ACGACGCGCT CGCCACCGGC
GACTCCGCGC TCGCCCACGC CGCGGCGCTC ATGCACATCA GCAGTACCGA GAAGTGGTTC
CGGGACCACC TCGCCGGCTC CGAGGACGAG ACATGA
 
Protein sequence
MSLSDKAITR IRELIQSGQL PPGSRLPPEQ QLAAELGLSR NLTREAVKAL VVARVLEIRR 
GDGTYVTSLE PAVLLEGLGS AVELLQGDTQ LELAEVRRLF EPVATGVAAV RITAAELAEV
QGHLAAMYAA KDDVELLNQH DAAFHRAVIA ATGNQTLTSL LEGISQRTVR ARVWRGMVDD
AVADSTVAEH QAIYDALATG DSALAHAAAL MHISSTEKWF RDHLAGSEDE T