| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4900 |
|---|
| Symbol | |
|---|
| ID | 8336254 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 5583901 |
|---|
| End bp | 5584860 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644957999 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003115601 |
|---|
| Protein GI | 256394037 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.216339 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGGCA AACTATTGAC GGCAGTCACG ACAATGCCTA AGTTGTGCCG CATGATCCTC
ACCGACAAGG TCGCCGTCGT CACCGGAAGC GGGCGGGGGC TCGGCCTGGC CTATGCCAGG
GCCCTGGCCG CCGCGGGCGC CGCGGTGGTC GTCAACGACG TCGACGCCGA CGCGGCGCGC
GCCGCGGCCG CGCAGATCGA GGCGGCCGGC GGCCGGGCCG TCGCCGAGGT CGCCGCGGTC
GGCACCACCG AAGCCGCCGA CGCCCTCGTG CGGCGCGCGG TCGACAGCTT CGGCCGCCTG
GACGTGATGG TCACGAACGC CGGCGTGCTG CGTGACAAGG TCCTGTGGAA GATGTCCGAC
GAGGACTTCG ACACCGTCGT CCAGGTCCAT CTGCGCGGGA CCTTCACCTG TGCCCGCGCC
GCCGCGGCGC ACATGCGCGA GCAGGGCACA GGCGGCCGCA TCATCGTCGC CGGCTCCCCG
GCGGGCCAGC GCGGCAACTT CGGGCAGACC AACTACTCCG CCGCCAAAGC CGGCATCGCG
GCGATGGTCC GCACCTGGTC CATGGAACTG GCCAGGGCGG ACATCACCGC CAACGCCGTC
ATCCCGGTCG CGGCCACCGC CATGACCAAG ACCATCGCGG CCTTCGCTCC GCACGTCGAA
GCCCTCGAAG ACCACGGCAC GCCGCTGCCC GACGCGCTGC GCAAGGGCGA GGGCTTCGGT
ACGCCGGAGG ACGCCGCCCC GCTCGTCGTC TTCCTGGCCT CCGACGCCGC CGCCGGCATC
ACCGGGCAGT GCATCGGCAT CGGCGGTGAC AAGCTGGCGC TGTGGTCGCA TCCGCAGGAG
ATCTCCGTCG CCTACGCCGA CGGCGGATGG AGCGCCGAAG CCATCGCCGC CGCCTGGCCG
GTCAGCGTCG GCCGGACCCC GGAGACCGTC GGCGTCCCCG CTCCCGGGAC CGGCCTGTGA
|
|---|
| Protein sequence | MFGKLLTAVT TMPKLCRMIL TDKVAVVTGS GRGLGLAYAR ALAAAGAAVV VNDVDADAAR
AAAAQIEAAG GRAVAEVAAV GTTEAADALV RRAVDSFGRL DVMVTNAGVL RDKVLWKMSD
EDFDTVVQVH LRGTFTCARA AAAHMREQGT GGRIIVAGSP AGQRGNFGQT NYSAAKAGIA
AMVRTWSMEL ARADITANAV IPVAATAMTK TIAAFAPHVE ALEDHGTPLP DALRKGEGFG
TPEDAAPLVV FLASDAAAGI TGQCIGIGGD KLALWSHPQE ISVAYADGGW SAEAIAAAWP
VSVGRTPETV GVPAPGTGL
|
|---|
| |