| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4889 |
|---|
| Symbol | |
|---|
| ID | 8336243 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 5572266 |
|---|
| End bp | 5572790 |
|---|
| Gene Length | 525 bp |
|---|
| Protein Length | 174 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644957988 |
|---|
| Product | protocatechuate 3,4-dioxygenase, alpha subunit |
|---|
| Protein accession | YP_003115590 |
|---|
| Protein GI | 256394026 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
|---|
| TIGRFAM ID | [TIGR02423] protocatechuate 3,4-dioxygenase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.58186 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACCCCA CCCCGTCCCA GACCGTCGGG CCCTTCTACG GCTACGCGCT GCCGTTCCCG
CAAGGCGGCC AGATCGCCCC GGCCGGCCAC GACGGCGCCC TCACCGTCCA CGGCCACGTC
CGCGACGGCG CCGGCGAGCC CGTCCCCGAC GCCCTGCTGG AGATCTGGCA GCCGGCTCCG
GACGGCTCGC GGGCCGGCGC TCCCGGATCA CTGCGGCGCG ACGGCCTGAC CTTCACCGGC
TTCGGACGCG TCAGCACCGG TCCCGACGGC CGCTACGTCC TTCGCACCCT GCCGCCCGGC
GGAGTGCCCT ACCTGTCGGT CTGCGTCTTC GCCCGAGGAC TGCTGCACCA TCTGTTCACC
CGCGTCTACC TGCCCGACGC CGATCTCGAC AGCGACGCGC TACTGGCAGC GCTGGAGTCG
GACCGGCGCA GCACCCTGAT AGCCGAGCCG ACGGCCGAGC ATGTGTACCG CTTCGACATC
CACCTGCAAG GGGAGAAGGA GACGGTGTTC CTTGACTTCC GCTGA
|
|---|
| Protein sequence | MHPTPSQTVG PFYGYALPFP QGGQIAPAGH DGALTVHGHV RDGAGEPVPD ALLEIWQPAP
DGSRAGAPGS LRRDGLTFTG FGRVSTGPDG RYVLRTLPPG GVPYLSVCVF ARGLLHHLFT
RVYLPDADLD SDALLAALES DRRSTLIAEP TAEHVYRFDI HLQGEKETVF LDFR
|
|---|
| |