Gene Caci_4882 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4882 
Symbol 
ID8336236 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp5559452 
End bp5560954 
Gene Length1503 bp 
Protein Length500 aa 
Translation table11 
GC content69% 
IMG OID644957981 
ProductAlpha-L-arabinofuranosidase B catalytic 
Protein accessionYP_003115583 
Protein GI256394019 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0472231 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGCCA GCTCCAGCGC ACCCCGCCTG CTCAGACTCG GCATCGGACT TCCCCGGCTG 
GTCGCCGCGC TGATCGTCGT CATCGGCATG ATGATCGGCG CCATGGTCCT GCCCGGACCG
GCGCACGCCG CGGTATCCGA ACCCTGCGAT ATCTACGCCG CCGGCGGCAC GCCCTGCGTG
GCAGCCCACA GCACGGTTCG GGCGCTCTAC GGCGCGTACA ACGGACCGCT CTATCAAGTC
CGGCGCTCCT CCGACAGCAC GACGGCGAAC ATCGGCGTGC TCTCCGCCGG CGGGACCGCG
AACGCCGCCG CCCAGGACTC GTTCTGCGCG GGCACCTCCT GTGTGATCAC CGTCGTCTAC
GACCAGTCCG GCCACGGCAA CAACGTGGCC TACCAGGGTC CGGGCGGAGC AGGCGGAACG
GACACGCCCT CCAACGCGAC CAGCGAGTCG CTGACCGTCG GCGGGTCCAA GGCGTACTCG
CTGTACATCA ACCCCGGCAA CAGCTACTGG CACAACGGCT CGGCCACGGG AATGCCCTTG
GGCAGCGCGC CCCAAGGCGC CTACATGGTG ACCAGCGGAA CCCACGTCAA CGGCGGGTGC
TGCTTCGACT ACGGCAACAG CGAGACCGAC CGGCACGCCG ACGGCGCCGG CGCCATGGAC
GCGATCTACT TCGGCACCAG CTGCTGGTTC GGCGGGTGTT CGGGCAGCGG GCCGTGGGTG
CAGGCCGACC TCGAATACGG GCTCTACTCC GGGGGCAGCC AGTCCTGGAA CGCCAACCAA
CGAGCCTTCA GCAGCCGCTA TGTCACCGCG ATGCTGAAGA ACAACGGGAC TTCGCAGTTC
GCGCTCAAGG GCGGGGACGC GCAATCCGGA GGTTTGACGA CATTGTGGAA CGGCGCTCTA
CCGCCGGGCT ACAGCCCGAT GCGGCAGCAG GGCGCCATCA TCCTGGGCAG TGGCGGCGAC
TGCTGCGCCT CCGGCGGCGG CAACCAGAGC CTCGGGACCT TCTACGAGGG CGCCATCACC
GCCGGCTACC CCAGTGACGC CACGGACAAC GCGGTCCAGG CCAACATCGC CGCGGCCGGC
TACGGCGGCG GTTCCACCGG CGGCGGCACC GCCGGCGAGG TGCACGCCGT GGGCGCCGGC
AAGTGCCTGG ACGTGCCGAA CTCCAGCACC GCGGGCGGCA CCCAGCTGCA GATCAACGCC
TGTGCCGGCG GCGCGAACCA GGTCTTCGCG CACACCTCCA GCGGTCAGCT GACGGTCTAC
TCCGGCAGCA CCCAGATGTG CCTGGACGCC AACGGGAAGG GCACCACCGC CGGCACGAAG
GTGATCATCT GGGCCTGCAA CGGCCAACCC AATCAGCAGT GGAACGTCAC GGCGAACGGC
ACGATCACCG GCGCCCAGTC AGGGCTCTGT CTCGACGTCA CCGGCGCCGC CACCGCCAAC
GGCTCGCCGG TGGAGCTGTG GACCTGCAAC GGCCAGTCCA ACCAGCAGTG GAGTCTGAGC
TGA
 
Protein sequence
MEASSSAPRL LRLGIGLPRL VAALIVVIGM MIGAMVLPGP AHAAVSEPCD IYAAGGTPCV 
AAHSTVRALY GAYNGPLYQV RRSSDSTTAN IGVLSAGGTA NAAAQDSFCA GTSCVITVVY
DQSGHGNNVA YQGPGGAGGT DTPSNATSES LTVGGSKAYS LYINPGNSYW HNGSATGMPL
GSAPQGAYMV TSGTHVNGGC CFDYGNSETD RHADGAGAMD AIYFGTSCWF GGCSGSGPWV
QADLEYGLYS GGSQSWNANQ RAFSSRYVTA MLKNNGTSQF ALKGGDAQSG GLTTLWNGAL
PPGYSPMRQQ GAIILGSGGD CCASGGGNQS LGTFYEGAIT AGYPSDATDN AVQANIAAAG
YGGGSTGGGT AGEVHAVGAG KCLDVPNSST AGGTQLQINA CAGGANQVFA HTSSGQLTVY
SGSTQMCLDA NGKGTTAGTK VIIWACNGQP NQQWNVTANG TITGAQSGLC LDVTGAATAN
GSPVELWTCN GQSNQQWSLS