Gene Caci_4873 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4873 
Symbol 
ID8336227 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp5541936 
End bp5543405 
Gene Length1470 bp 
Protein Length489 aa 
Translation table11 
GC content68% 
IMG OID644957972 
ProductAlpha-L-arabinofuranosidase B catalytic 
Protein accessionYP_003115574 
Protein GI256394010 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.958979 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.944256 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCAA GCGCATGGAG CCGCCGAAAA CTCGGCAGCC TGGCGGCCGG GATCACGGTC 
GTGCTCGGCA CGATCGCCGG CACCGCGGCC ATGACCGGTG CGGCGCACGC CGCGTCGCAG
GGCCCGTGTG ACATCTACGC GGCCGGCGGC ACGCCGTGCG TGGCCGCGCA CTCGACGACG
CGTGCCTTGT CCGCCGCGTA CAACGGTCCG CTGTACCAAG TGCGGCGCTC CTCGGACAAC
ACGACCACGA ACATCGGACT GCTCTCCGCG GGCGGCGTCG CCAACGCCGC GGCGCAGGAT
TCGTTCTGCG CGGGTACATC CTGTGTGATC ACCGTGATCT ACGACCAGTC CGGGCGTGGC
AACAACCTGA CTCCCGCGCC CGCGGGCGGG TACGTGCACA CCCCCGACAG CCCCGCGAAC
GCCACCGCGG CGCCGATCAC CGTCGGCGGC CACAAGGCCT ACGGCGTGTT CACCTCCACG
GGTATCGGCT ACCGCGACGA CACCACCAAC GGGGTGGCCA CCGGGGACAG CCCGGAGGGC
GAGTACGACG TGGTGGACGG CACGCACTAC AACAACGGGT GCTGCTTCGA CTACGGCAAC
GCCGAGACCA CCAACAACGA CGACGGCAAC GGCACCATGG AGGCGATCTA CTTCGGCAAC
GCCTCCTATT GGGACACCGG CGCCGGCAAC GGCCCTTGGA TCATGGCCGA CCTGGAGAAC
GGTCTGTTCT CCGGCTCCAA CGTGAACAGC CCCAATCCCG GCGATCCGAC GATCAACTAC
CGGTTCACCA CCGCCATGAT CAAGGGCGGC GCGAACCAGT GGGCGATCCG CGGCGGCAAT
GCGGCCTCGG GAGGCTTGTC CACCTTCTAC AGCGGGCCGC GTCCTCCCGG GTACAACCCG
ATGCACAAAG AGGGCGCGAT TCTGCTGGGC ATCGGCGGTG ACAACAGCGA CGGCGCCGCC
GGAACCTTCT ACGAAGGCGT GATGACGTCG GGGTATCCCT CCGACGCCAC CGAGGCCGCG
GTGCAGGCGA ACATCAACGC CGCCGGATAC GCCGCCGGCA CCAGCGGGGG CACCGGCACC
GGCGCATTGC ACGCCAACGG CGCCAGCAAG TGCCTGGACG ATCCGAACGG CAGCACCACC
GGCGGAACCC AGCTCCAGAT CTATGGCTGC AACGGGCAGG CCAACCAGAC CTGGACGCGC
ACCTCGTCGA ACCAGCTGAC CGTCACCAAC AGCGGGACGA CGGACTGCCT GGACGCGAAC
GGCCAGGGCA CCAGCCCCGG CACGAAGGTA ATTATCTGGC CGTGCAGCGG ACAGAGCAAC
CAGCAGTGGC AGTTCAACGC CAACGGCACC GTCACCGGCG TGCAATCAGG GCTCTGCCTC
GACGTGACCG GCGCGTCCAC CGCGGACGGC GCGCTGGTCG AACTGTGGAC CTGCAACGGC
GGCAGCAACC AACAGTGGAA TCTCGGATAG
 
Protein sequence
MKASAWSRRK LGSLAAGITV VLGTIAGTAA MTGAAHAASQ GPCDIYAAGG TPCVAAHSTT 
RALSAAYNGP LYQVRRSSDN TTTNIGLLSA GGVANAAAQD SFCAGTSCVI TVIYDQSGRG
NNLTPAPAGG YVHTPDSPAN ATAAPITVGG HKAYGVFTST GIGYRDDTTN GVATGDSPEG
EYDVVDGTHY NNGCCFDYGN AETTNNDDGN GTMEAIYFGN ASYWDTGAGN GPWIMADLEN
GLFSGSNVNS PNPGDPTINY RFTTAMIKGG ANQWAIRGGN AASGGLSTFY SGPRPPGYNP
MHKEGAILLG IGGDNSDGAA GTFYEGVMTS GYPSDATEAA VQANINAAGY AAGTSGGTGT
GALHANGASK CLDDPNGSTT GGTQLQIYGC NGQANQTWTR TSSNQLTVTN SGTTDCLDAN
GQGTSPGTKV IIWPCSGQSN QQWQFNANGT VTGVQSGLCL DVTGASTADG ALVELWTCNG
GSNQQWNLG