| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4857 |
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| Symbol | |
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| ID | 8336211 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 5523474 |
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| End bp | 5525285 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644957957 |
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| Product | thiamine pyrophosphate protein |
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| Protein accession | YP_003115559 |
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| Protein GI | 256393995 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACGA AGGTTTCCGA CTACGTCCTG CAGCGCCTGC GCGACTGGGG TGTGGAGCAC
GTCTTCGCGT ATGCCGGCGA TGGCATCAAC GGGTTGCTCG CCGCCTGGGG GCGGGCGGAG
AACAAGCCCA TGTTCGTCCA GTCCCGGCAC GAGGAGATGT CCGCCTTCGA GGCGGTCGGT
TACGCGAAGT TCTCCGGCAA GGTCGGGGTG TGCGCGGCCA CCTCAGGTCC CGGCGCCATC
CACCTGCTCA ACGGCCTGTA CGACGCCAAG CTGGACCACG TGCCGGTGGT GGCGATCGTC
GGGCAGACGA ACCGCTCGGC GATGGGCGGC TCCTATCAGC AGGAGGTCGA CCTGCTGAGC
CTGTACAAGG ACGTGGCGAG CGCCTACTGC GAGATGGTGA CCGTTCCGGA GCAGCTGCCG
AACGTCCTGG ACCGGGCGAT GCGGGTCGCC GCCACCAAGC GCACCGTCAC CGCGGTGATC
ATCCCCGCGG ACGTCCAGGA GTTGGAGTAC TCCGCGCCCG GGCACGCGTT CAAGATGGTC
CCGTCCAGTC TCGGACTGCC CCACTCGACC GCGGTACCCC AGGCGGAGGA GCTCCGGAAG
GCCGCGGATC TGCTGAACGC CGGACGGAAG GTGGCGATCC TGGCAGGCCA GGGCGCCCGC
GCCGCGAGCC GAGAGGTGCA ACAGGTCGCC GACCTGCTGG GAGCCGGCGT GGCCAAGGCA
CTGTTGGGCA AGGACGTCCT GTCCGACGAG CTGCCCTACG TCACGGGCTC GATCGGGCTG
TTGGGAACCC GGCCCTCCTA CGAGCTGATG CGTGACTGCG ACACCCTGCT CGTGATCGGC
TCCAGCTTCC CCTACACGCA GTTCCTGCCG GAGTTCGGTC AGGCGCGCGC GGTGCAGATC
GACATCGATC CGGGCATGGT CGGGCTGCGC TACCCGTTCG AGGTCAACCT CGTCGGCGAC
GCCCGCGAGA CCCTGCAAGC GCTGCTTCCC CTGCTGAACG CCAAGGACGA CCGCTCCTGG
CGCGAGACCG TGGAGGAGAA CGCCGCGCGC TGGTGGGAAG TCATGCAGCG GCGGGCGGCG
ACCGAGGCCG ACCCGATCAA CCCCGAGTAC GTCGTGCACG CTCTGGACGC CCTGTTGCCC
GACGACGTCA TCGTCGCCGC CGACTCGGGT TCCTCAGCAA ACTGGTACGC GCGCCATCTG
CGCTTCCGCG GCTCGATGCG CGGTTCGCTG TCCGGGACGC TCGCGACGAT GGGTCCCGGA
GTCCCGTACG TGATCGGCGC CAAGTTCGCC CACCCGGACC GGCCGGCGAT CGCGCTGGTC
GGTGACGGCG CCATGCAGAT GAACGGCATG GCCGAGCTCA TCACCGCCGC CAAGTACTGG
GAGCGCTGGC AAGACCCGCG GCTGGTCGTG GCCGTCTTGA ACAACCACGA CCTGAACCAG
GTCACCTGGG AGATGCGGGC CATGGCCGGC GCCCCGCAGT TCGAGCCCTC CCAGTCGCTG
CCGGACGTGC GCTTTGCGGA CTTCGCGCGC TCCATCGGGC TGGAAGGCGT GCGGGTGGAG
AAGCCCGAAC AGGTGGAACC CGCCTGGCGG CAGGCACTGG CCGCGGACCG GCCGTTCGTC
ATCGACTTCC GCACCGACCC GGCGGTCCCG CCGATCCCGC CGCACGCCAC CCTCGACCAG
ATCGAGGCCG CGGCGTCGGC GATCGTGCAC GGCGACAGCG ACCGCGTCTC GATGATCAAG
CAGGGCATCA AGTCCAAGAT CCAGGAGTTC CTGCCGGGCG GGCCCGACGG CGACGACGCG
TCAGATCACT GA
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| Protein sequence | MATKVSDYVL QRLRDWGVEH VFAYAGDGIN GLLAAWGRAE NKPMFVQSRH EEMSAFEAVG
YAKFSGKVGV CAATSGPGAI HLLNGLYDAK LDHVPVVAIV GQTNRSAMGG SYQQEVDLLS
LYKDVASAYC EMVTVPEQLP NVLDRAMRVA ATKRTVTAVI IPADVQELEY SAPGHAFKMV
PSSLGLPHST AVPQAEELRK AADLLNAGRK VAILAGQGAR AASREVQQVA DLLGAGVAKA
LLGKDVLSDE LPYVTGSIGL LGTRPSYELM RDCDTLLVIG SSFPYTQFLP EFGQARAVQI
DIDPGMVGLR YPFEVNLVGD ARETLQALLP LLNAKDDRSW RETVEENAAR WWEVMQRRAA
TEADPINPEY VVHALDALLP DDVIVAADSG SSANWYARHL RFRGSMRGSL SGTLATMGPG
VPYVIGAKFA HPDRPAIALV GDGAMQMNGM AELITAAKYW ERWQDPRLVV AVLNNHDLNQ
VTWEMRAMAG APQFEPSQSL PDVRFADFAR SIGLEGVRVE KPEQVEPAWR QALAADRPFV
IDFRTDPAVP PIPPHATLDQ IEAAASAIVH GDSDRVSMIK QGIKSKIQEF LPGGPDGDDA
SDH
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