Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_4845 |
Symbol | |
ID | 8336199 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 5515759 |
End bp | 5516556 |
Gene Length | 798 bp |
Protein Length | 265 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644957945 |
Product | RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily |
Protein accession | YP_003115547 |
Protein GI | 256393983 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02980] RNA polymerase sigma-70 factor, sigma-B/F/G subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.059143 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCGCCCA TCCCTGTCGC CCCGGAGGAA CTGGCCCGTG AACGGGCTGC GGCCCGGGCT GCGCTGGCGC GTCTGAGGAA GATGTCGCCC GACGACAGCG AGTACGAGGC ACTGCGCGAG TACGTCATCG GCGAGTACAT GTCCTATGCC CGCTTCGTGG CGGCCAGGTT CCGCCTGCGC GGTGAAACGC AGGCGGATCT GGAGCAGGTC GCCTATCTGG GCCTGGTCAA AGCCGTCGAC AACTTCGACC CCGACTACGG CGCGACGTTC CTCACCTACG CCACGCCGAT GATCGCCGGC GAGGTGCGGC GCCATTTCCG GGACACCACC TGGCATGTGC ACGTTCCCCG CCGCGCTCAG GAGAACGCGT TGGCGGTGCG GGCTGTCGAG CGGGAGCTGA CCCAGCAGCT GGGTCGCGCG CCGAGTGCGG CGGAGATCGG CCGCCGGCTG GATCTGTCGG CCGACGAGGT CGCCGAGGCC TACGAAGCCA GCGCCGCGCA CCACACCGCC TCGCTGGACG TGCCGGTGGC CATGGCCGAC GGCGACGGCG CCAGCCTGGG GGACCTCCTC GGCGACGAGG ACCCCGGCTT CGACTCGGTC GTCGACCGGG AAGCCCTCAA GCCGCTGCTG GCCGAACTCA GCCCGCGCGA CAAGCGGATC CTGCTGATGA AGTTCTTCCG CAACATGTCC CAGGCACAGA TCGGCGCCGA GATCGGAGTC TCGCAGATGC AGGTCTCCCG CCTGCTGTCG CAGATCATCG GCAGCTTGCG GGACCGACTG GAGGTCGGGA AGAACTGA
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Protein sequence | MAPIPVAPEE LARERAAARA ALARLRKMSP DDSEYEALRE YVIGEYMSYA RFVAARFRLR GETQADLEQV AYLGLVKAVD NFDPDYGATF LTYATPMIAG EVRRHFRDTT WHVHVPRRAQ ENALAVRAVE RELTQQLGRA PSAAEIGRRL DLSADEVAEA YEASAAHHTA SLDVPVAMAD GDGASLGDLL GDEDPGFDSV VDREALKPLL AELSPRDKRI LLMKFFRNMS QAQIGAEIGV SQMQVSRLLS QIIGSLRDRL EVGKN
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