Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_4710 |
Symbol | |
ID | 8336064 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 5369128 |
End bp | 5372049 |
Gene Length | 2922 bp |
Protein Length | 973 aa |
Translation table | 11 |
GC content | 76% |
IMG OID | 644957810 |
Product | transcriptional regulator, LuxR family |
Protein accession | YP_003115412 |
Protein GI | 256393848 |
COG category | [R] General function prediction only |
COG ID | [COG3899] Predicted ATPase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0640272 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCGGTTC CCTCCCGGCA CGCCGAGGAC CACACCGAGA CCGTCGCGTG GTCCGGAGCG GGCTTCGCCT TCGTCGGGCG CGAGCGCGAG CTCGGGCTGC TGCTGGCCGG CGTCCGGCAT CCCCCGGCGG TGGTGCTGGT CGAGGGCGAG GCCGGGATCG GCAAGTCCCG GCTGGTGCAC GAGGCGGCCG CCGCCGTGGC CGCCGCCGGC CGCCGGGTGC TGACCGGGCT GTGCCACCCG CTGCGCGAGC CCTACCCCTA CGGCCCGGTC ATCGACGCGC TGCGCAAGGC CGGCGACTGG CTGCCGCCGG TCGCCGACCT GCCGCCGAGC GCCGGCGTGC TGGCGCCGCT GCTGCCCGAT CTGGCCGCGC GGCTCCCGGC GGCGCCGCGC CCGGCCGCCG ACGCGCACGC CAAGCGCTTC CAGCTGGTCA ACGGCCTGCG CTCGTTCCTG GCCGCGCTGG GACCGGCGGT CCTGGTCGTC GAGGACGCGC ACTGGATCGA CGAGGCCACC CGCGAACTGC TCCTGCTGCT CACCCGGGAC ATGCCCGAGC AGCTGAGCCT GGTGCTCACC TACCGGAACG AGGACCTGCC GCCGGGCGGA TCGGTCCTCG GCCCGGCCTA CCGCCGCCAG CCCGGCGTCA GCGGCGCCGC GATCCACCTG AACCCGCTGT CGGGACCGGA CGTGCAGGCC TTGGCGCACG CCGCCCTGGG CCCGCACGCC ACCGTCGAGC TGAGCACCGT GCTGTACCAG CGCAGCGAGG GACTGCCGCT GGCCGCCGAG GAAGACCTGA TCACCCTGGC CGAACGCGGT CCCGGCGAAG GCCCGGATCC GCCCGGCAGC CTCCTGGACG ATCTGGCGCA CGCCGAGGTG CCGCGCGGGC TGCGCGAGGC GTTCACCGAG CGTCTGAGCG CGCTGTCGGC GGCGGCGCGG ACCGTGGTCG AGGCCGCCGC CGTCCTGGAC GTGCCGGCTG CCGAGCAGCT GCTGGCCCGG GTCGCCGACC TGGAACCGGA GCAGGCCTCG CGCGGCCTCA CCGAGGCGCT GGGCGTCGCG GTGCTGCAGG AGACCGACAC CGACCGCTAC TTCTTCCGGC ACGTCCTGGC CCAGCGCGTC GCCTACGAGC AGATGCCCGG ACCGCTGCGG GCCCGCCTGC ACCGGCGTGC CATCGCCGTG CTGGAGACCC GGTCCCCGCC GCCGCTGGTC CAGATCGCCC ACCACAGCCA GCACCTCGGC GACCCGCAGG CCTGGCTGGA GCGCGCGGAG GCGGCCGCGT GGCAGGCGAT CGGGCTCGGC GACTCCGGGA CCGCCGCGGC GCTGCTGCAC CAGATCCTGG AGCAGCCCGG CGTGGCCGGG GACCGGCGCT CGCGCGCCGC CCTGGCGCTG GGCGTCATCG CGGTCAACGG CGTCGACTAC GTCACCGACG CCCGCGCGCT GCGCCGCATC CTGGCCGACC CGCAGCTGCC GATCGCGACC CGGGGCGAGA TCCGGCTCTC GCTCGGGCTG CTGATGGTCA ACCACGCCGG GGACCGCGCC GGCTTCCGCG AGGTGCGACG CGCCGCCGAG GAGCTCGCCG ACCGCCCCGA CCGCGCCGCG CGCGCGATGG TCGCGCTGGC GATGAACGAG CGCGACGAGA ACGGCGTGCG GGCCTGGGAG TGGATGGAGC GCGCCGACGC CGAGGCGGCG CGGTGCCCCG ACCCGGCCGT GAGCGCCGCG GCGCAGGCCA CCCGGCTCAC GCTGCTGGCC CGGGAGGGGG ACCCCGGCGT GTGGGCGCTC ACCGACCAGC TGCCCCGCAC CAGCGCCGAC GACGAGGTGA TGCGGCAGAG CGTCCGCGCC CTGTACAACA CCGGCGAGCT GGCGATCGAG CTCGGGCACG ACCGGCGCGC CGCGCGCATG CTGCACGAGA GCCGCGACCT GGCCACCCGC GTGAGCTTCC CGCGCATGGA GTGCTACAGC AGGATCGCGC TGCTGCGCCT CGACGCGCTG GCCGGGGACT GGGAGGACGT CGAGAACCGC TTCACCGGGC TGTGCTCGGA ATACCCGGAC ATCGCCATGG CCAAGACCGA CGAGGCGCTC ACCGTCGGGC AAGTGGCGGC GGCGCGCGGA CTGCGAGCCC GCGCGGCGGA GCTGTTCACC GCCGCCGCGG CTTACGGCGA GATGGAGTCG CAGGTCACCG CGGGGTTGCG CGCGGCGGCG GGGCTGATCG CCGTGCGCTT GGCCGCTGAC GCCGAGCAGG ACGCGTGGGC GATCGCCGAG CCCGCGGTCG CGACGCTGCG GCGGGCCGGT GCGTGGGCTC GGGGCAGCGG GCTGGTCCCG GCAGCCGTCG AGGCGGCGCT GGCGTGCGGG TACCGGGACG CCGCCGAGCG GCTGGTCGCC GACGCCGAGG ACGGACTCCG GGACCGGGAC GCTCCGGCAG CCACTGCCGA GCTGTGCCTG GCGCGCGGCT TGCTGAAGCG CGGGAGCGAC GATGCCGCGG CCGCGGTGCG CGACTTCGAA TCCGCCCGGC AGCAGTGGTC CGACATCGGA CGTCCTTACG AATCGGCCCA AGCTTGCGAG CGGCTCGGCG TCGCGCTCAG CGCCTCCGGC GACGGCGAAG CGGCCGGCGT CCGGCTGACC GAGGCGCTCG CCGCCTACGA CCGCCTCGGC GCCGCGCACG ATGCCGCGCG CTGCCGTCAC ACCCTGCGTG ACCTGGGCTT GGTCAAGGCC GCCGGACGCG GACGGCGCGG CTACGGCGAC GAGCTGTCCC CGCGCGAACG CCAGGTCGCC GAGCTGGTCG CCGGCGGCGC GACCAACCAC GACATCGCCG AGGCGCTGTT CCTGTCCCCG CGCACCGTGG AGCAGCACGT CGCGCGGATG CTGCGGAAAC TGGGGACCAC CAGGGCCGGC GTCGCGAGCG TTTTACGGGG CCGGGAACGC CAAAGGGGTT GA
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Protein sequence | MAVPSRHAED HTETVAWSGA GFAFVGRERE LGLLLAGVRH PPAVVLVEGE AGIGKSRLVH EAAAAVAAAG RRVLTGLCHP LREPYPYGPV IDALRKAGDW LPPVADLPPS AGVLAPLLPD LAARLPAAPR PAADAHAKRF QLVNGLRSFL AALGPAVLVV EDAHWIDEAT RELLLLLTRD MPEQLSLVLT YRNEDLPPGG SVLGPAYRRQ PGVSGAAIHL NPLSGPDVQA LAHAALGPHA TVELSTVLYQ RSEGLPLAAE EDLITLAERG PGEGPDPPGS LLDDLAHAEV PRGLREAFTE RLSALSAAAR TVVEAAAVLD VPAAEQLLAR VADLEPEQAS RGLTEALGVA VLQETDTDRY FFRHVLAQRV AYEQMPGPLR ARLHRRAIAV LETRSPPPLV QIAHHSQHLG DPQAWLERAE AAAWQAIGLG DSGTAAALLH QILEQPGVAG DRRSRAALAL GVIAVNGVDY VTDARALRRI LADPQLPIAT RGEIRLSLGL LMVNHAGDRA GFREVRRAAE ELADRPDRAA RAMVALAMNE RDENGVRAWE WMERADAEAA RCPDPAVSAA AQATRLTLLA REGDPGVWAL TDQLPRTSAD DEVMRQSVRA LYNTGELAIE LGHDRRAARM LHESRDLATR VSFPRMECYS RIALLRLDAL AGDWEDVENR FTGLCSEYPD IAMAKTDEAL TVGQVAAARG LRARAAELFT AAAAYGEMES QVTAGLRAAA GLIAVRLAAD AEQDAWAIAE PAVATLRRAG AWARGSGLVP AAVEAALACG YRDAAERLVA DAEDGLRDRD APAATAELCL ARGLLKRGSD DAAAAVRDFE SARQQWSDIG RPYESAQACE RLGVALSASG DGEAAGVRLT EALAAYDRLG AAHDAARCRH TLRDLGLVKA AGRGRRGYGD ELSPRERQVA ELVAGGATNH DIAEALFLSP RTVEQHVARM LRKLGTTRAG VASVLRGRER QRG
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