Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_4666 |
Symbol | |
ID | 8336020 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 5312467 |
End bp | 5315769 |
Gene Length | 3303 bp |
Protein Length | 1100 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644957766 |
Product | transcriptional regulator, winged helix family |
Protein accession | YP_003115368 |
Protein GI | 256393804 |
COG category | [R] General function prediction only |
COG ID | [COG3903] Predicted ATPase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0465391 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCAGCTCG ACGTCCTGAT CCTCGGTCCG CTCCAGGCAC GCGCCGACGG CGCACCGATC CCGATCGGCG GCGCCCGGCT GCGCACCCTG CTGACCAGAC TCGCCCTCGA CGCCGACCGC ACCGTCCCGG CAGCCGCACT CATCGACGCC CTCTGGAACC ACCAACCACC CGACGGCGCC GCCAACGCCC TGCAATCGCT CATCTCCCGG CTCCGCCGCG CCCTCGGCGA CCCCGACCTC GTCCAAGGCA CCCCCGGCGG CTACCGACTC GCCATCGACC CCCAAGCCGT CGACGCCCAC CGCTTCGAAA CCCTCGCCCG CCAAGGCAGA CTCGCCGGCG ACCCCACCAC CGCCCGCCAC CTCCTGCGCC AAGCCCTCGC CCTCTGGCGC GGACCCGCCC TCGCCGACAC CGCCGACGCC GGCTTCGCCA CCGCACCCGC CGCACGCCTC GACGAACTAC GCCTCACCGC CCAATGCGAC CGCCTCACCG CCGAACTCCA CCTCGGCATG CACACCGACG CAATCCCCGA ACTCGAAGCC CTCACCACCG AACACCCACT GCGCGAAAAC ATCACCGCCC TACTCGTCAA AGCCCTCTAC GCAGCAGGCA GACAAGCCGA AGCACTCGCC GCCTACGAAC ACACCCGCAC GGCGCTCGCC GACCAACTCG GCATCGACCC CTCCGAACAG CTGGCCACCG TACACCTCGC AGTACTGCGC AACGACCCGC TGCTGACTCC GGCGAACACC GCAGTGCCAA CGCCCAGCTC TGCCGAACAG CGACGCACCA ACCTGCGGGC CCGCCTGAAC AGCTTCGTCG GCCGCGAAGA AGAAGTCGCC CGCATCGGCA CGATGCTCGC CACCTCCCGA CTGGTCACCC TCGTCGGACC CGGCGGCGCC GGCAAAACGC GCCTCGCCGG CGAAGCCGCG ACACGGCTGC CCGAAGACAT CGACGTGGCC GACGGCGTCT GGCTCGTCGA ACTCGCCCCG GTCACCGACC CCGCCGAACT GCCGCAAGCG ATCCTCACCG CACTCGGACA CCGCGAAATG CGCGTCCTGC GCAACGAAGC ACAAGCCGGG CCGGCGCGCG ACGCCCTGAC CCGCGTCGCC GAAGGACTCG CCGGACAGCA CCTGGTCATC GTGCTCGACA ACTGCGAACA CCTCGTCGAC GCCGCCGCGC ACGCCGCCGA ACACCTGCTG CAGCACGTGC CCGGCCTGCG GATCGTCGCC ACCAGCCGCG AACCGCTGGG CATCGGCGGG GAGAACCTGT TCCCCGTGCT GTCGCTGGCA CAACCCGCCG ACCCGGACCA ACTCGCCGCC GCCGAGCAGG CGCTGGCGTT CCCGGCGGTG CGGCTGTTCG CCGACCGCGC CGGCGCCGTG CGCCCCGGCT TCAGCGTCGA GGACGAGAAC GTCGCGGACG TCGTGAAGAT CTGCCGCCGC CTGGACGGGC TGCCGCTGGC GATCGAGCTG GCCGCCGCGC GTCTTCGCAC CCTGCCGCTG CACGCTGTCG CCTCGCGTCT CGACGACCGG TTCCGGCTGC TCACCGGCGG CAGCCGCACC GCCATGCCGC GGCACCAGAC GCTGCGCGCG GTCGTCGCCT GGAGCTGGGA GCTGCTGTCG GAGCAGGAGC GGGACCTGGC CGAGCGGCTG TCGGTGTTCC CCGGCGGCAT CACCGCCGAA TCAGCCGCCG CGGTGCATCC CGCCACCGCC GCCGACATCG ACGACCTGTT GTTCGCGCTT GTCGACAAGT CGCTTCTGCA ACCGGTCGAG CCGGACGTCG CGCGCCCCGG CCACACAGAC GATGTCGGCC ACACAGACGA AGCCCTCGAC ACCCCGCCGC GCTGGCGCAT GCTGGAGACC CTGCGCGAAT ACGGCATCGA ACGACTCGCC GAGGCCGGCA CCGTCACCGA CGTCCGCCGC GCCCACGCCC GCTACTTCCT CGACCTCGCC GAAGAAGCCG AGCCCCACCT GCGCCGCCGC GAACAACTGC GCTGGCTGGC GCGCCTGGAC GCCGACAGCG ACAACATCCT CGCCGCCCTC CGCTTCGCCG CCGACATCGG CGACGCCGAC ACCGCGATCC GGCTCGCCGC GTCCCTGGCC TGGTACTGGT CCATCGTCGG CCAGACCATC GAGGGCCGAG CCTGGCTGGA CCTGGCCCTG GCGGTCCCGG GCGAATCCCC GCCCGAAGCC CACGCGGTCG TCAAGATCCT GCACGCGCTC GGCGGACTGT TCAGCGCGCA GGACTGGACC AACCTCTCGG ACATCACCAA CGCCCTGGCC TCCGTCATCG ACGACGCCAA CGCCGCCCAC GACAACCCGC TGCTGGCCAT CGCCGCCTGC ACCATCCCGA TCATCACCGA CGACCTCGAA GGCGTCTACG CCGCCGTCGC GGTCCACGAG TACCACCCCG ACCCCTGGGT CGGCGGAATG CTCCACCTCA TGCGCGGCAT GGCCGCCGAG AACGGCGGCG ACCTCATCAC CCAGCGCCAC GACCTGGAAC TGGCCCGCGA CCGCTTCGCG CAGATCGGCG AACGCTGGGG TCTGTCGGCG ACCCTGGCAG CCCTCGCCAC CATGGCCATG GCCGACGGCG ACCTGCCAAC AGCCATGCGC ATGCAGGACG AAGCCCTGGG CCTGCTCCGA GAAATCAACG CAGCCGACGA CGCCGCACAG GTACAGATGA TGCGCGCCTT CGCCCTCGCC CGCACCGGCG CACTGGACGA AGCCCAAACA CTGATGACGT CGATCCTGGA CTCAGGCCGG CGCACCCGCT CGCACCCCTC GATCCTGATG GCGTACGTAG GACTAGCCGA CATCGCCCGC CAAAAAGGCG AACCCGAAGC CGCATGGGGC TACCTCCAAG CCTCCGACGA CATCATCCGC AACCACTGGC ACGGACCACC CCAGCTCCTA GCGATGCGCG AAGTCGCCGC GGCCCTCCTC CACCTCCTCG CCACCGACCC CGACGCCACC AAGAAGGCAC ACGCCAGACT CCAAGAGGCA TACCGCCTCG GCTCCGCCGC CCACGACATG CCAGTCCTCA GCCGCATCGC CATAGTCGTC GCCTGCTACA CCAACGCCAC CGGCGACCCG GCATCCGCCG CACGAGCCCT GGGCACCGCA GTATCCCTCC GCGGCGGCAT CGACCGAGGC GACCCAGACC GCGCCGCCGT CACCGACAGC GTCCGAGAGC AACTCGGCGA GGCGAAGTAC GAGGCCGAAT TCGCCGTGGG GCACGCTTTT ACGCGGCTGG AGGGGTTGGC GTTCCTCGGG GAATGCTTGG GGATTGAGGC TGCGGGAGCG TGA
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Protein sequence | MQLDVLILGP LQARADGAPI PIGGARLRTL LTRLALDADR TVPAAALIDA LWNHQPPDGA ANALQSLISR LRRALGDPDL VQGTPGGYRL AIDPQAVDAH RFETLARQGR LAGDPTTARH LLRQALALWR GPALADTADA GFATAPAARL DELRLTAQCD RLTAELHLGM HTDAIPELEA LTTEHPLREN ITALLVKALY AAGRQAEALA AYEHTRTALA DQLGIDPSEQ LATVHLAVLR NDPLLTPANT AVPTPSSAEQ RRTNLRARLN SFVGREEEVA RIGTMLATSR LVTLVGPGGA GKTRLAGEAA TRLPEDIDVA DGVWLVELAP VTDPAELPQA ILTALGHREM RVLRNEAQAG PARDALTRVA EGLAGQHLVI VLDNCEHLVD AAAHAAEHLL QHVPGLRIVA TSREPLGIGG ENLFPVLSLA QPADPDQLAA AEQALAFPAV RLFADRAGAV RPGFSVEDEN VADVVKICRR LDGLPLAIEL AAARLRTLPL HAVASRLDDR FRLLTGGSRT AMPRHQTLRA VVAWSWELLS EQERDLAERL SVFPGGITAE SAAAVHPATA ADIDDLLFAL VDKSLLQPVE PDVARPGHTD DVGHTDEALD TPPRWRMLET LREYGIERLA EAGTVTDVRR AHARYFLDLA EEAEPHLRRR EQLRWLARLD ADSDNILAAL RFAADIGDAD TAIRLAASLA WYWSIVGQTI EGRAWLDLAL AVPGESPPEA HAVVKILHAL GGLFSAQDWT NLSDITNALA SVIDDANAAH DNPLLAIAAC TIPIITDDLE GVYAAVAVHE YHPDPWVGGM LHLMRGMAAE NGGDLITQRH DLELARDRFA QIGERWGLSA TLAALATMAM ADGDLPTAMR MQDEALGLLR EINAADDAAQ VQMMRAFALA RTGALDEAQT LMTSILDSGR RTRSHPSILM AYVGLADIAR QKGEPEAAWG YLQASDDIIR NHWHGPPQLL AMREVAAALL HLLATDPDAT KKAHARLQEA YRLGSAAHDM PVLSRIAIVV ACYTNATGDP ASAARALGTA VSLRGGIDRG DPDRAAVTDS VREQLGEAKY EAEFAVGHAF TRLEGLAFLG ECLGIEAAGA
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