| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4587 |
|---|
| Symbol | |
|---|
| ID | 8335941 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 5219019 |
|---|
| End bp | 5220416 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644957688 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003115290 |
|---|
| Protein GI | 256393726 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4325] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0145917 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGATCGG CGAGGATTGC CCTATTGGCG CTCGTATCGG GACAGGGAGC CGCGTTGACG
CACGTCGAGC TGCGGCCCGG CTGGCGCCGG GAGGCGCTGC GCACCAGCCT GTGGTGGGTG
CCGACGCTGG AGGTCGGGGC GGCGTTCCTG CTGTTCTGGG GCGGGTACCT GCTCGACCGC
GCCGCCTACA ACGGCACGCT CAAGCTGCCG TCCTGGGTGA TCAGCGGCAA CGCCGACGCC
TCGCGGCAGA TCCTGGCGGC GCTCGCCGCG GCGGTCATCA CGGTGATCGG CGTGGTGTTC
TCGGTGATCC TGGTCGCCCT GACGCTGGCG GCGAACCAGC TCGGACCGCG GATGCTGCGC
AACTTCATGC GCGACCGCGG GACGCAGTGG ACGCTGGGCA CGTTCGTCGG CACGTTCACC
TTCGCGATCC TGGTGCTGAT CTCGATCGGG CCGGGCAAGC ACGGCGACTT CGTCCCGCAC
GCCTCGATCA GCGCGGTGCT GTTCCTGGCG CTGGTCGACG TCTTCATCCT GATCTACTTC
ATCCACCACA TCGCGGTGCA GATCCAGCTG CCCTACGTCA TCGCCTCCAT CGCCTCCGAC
GTGGTGAAGG CGATCGAGGG TGAGGCGGCA CCGCCTGCGG GCGGACCGAA GCTCGGGCCC
ACGCCCCAGG AGATCCTGGC GACGCTGAAG GACGAGCACG GCGTGGTCAC CGCATCGGAG
AGCGGATACC TGCAGTACGT CTCGCACTCC AAGCTCGTCC GCATCGCCAC CGAGGCGGAC
GCGGTGATCC ACCTCCTCTA CCGCCCCGGC CACTTCATCG TCGCCGGCCG CCTCCTGGCG
ACAGTCACCC CGCCGGACGC CGCCCCGCAC GTCAAGGAGG CGCTGCGGCG GGCGCACCTG
AACGGGCCGT ACCGGTCCCT GACGCAGGAC ATCTCCTTCG GCATCGACCA GCTGGTGGAG
ATCGCCGTCC GCGCGCTGTC CCAAGCGGTC AACGACCCCT TCACGGCCCT GACCTGCATC
GACTGGATCG GCGACAGCCT GCGCCAGGTG GCACTGCGCT GGCACCCGCA GGTGGTCCAC
CGGGACCGCG CGGGCTACGT GCGCCTGATC CGGACCCAGG CCTCCTACGA CCGCCTGGTC
CGCCGCGGGT TCGAGAAGGT GCGCCAAGCC AGCGGCGGCG TGCCGTCGGT GATGATCAGG
GAGCTGCAAG CGCTGAAGGA GATCATGGCG CAGGCGCCGC GCGTGGAGCA GTACGCGGTG
CTGCGCGAGC AGGCGGACAT GATCAAGACG TCGGCGGAGC AGTCGATCCC GGAGCCGCGG
GACCTGGCGG ACGTCGTGAG CGTGTACGAC GAGCTGGTGG CGCTGCATGA GCGGTTGTTG
CGGGAGACGG GGGATTAG
|
|---|
| Protein sequence | MRSARIALLA LVSGQGAALT HVELRPGWRR EALRTSLWWV PTLEVGAAFL LFWGGYLLDR
AAYNGTLKLP SWVISGNADA SRQILAALAA AVITVIGVVF SVILVALTLA ANQLGPRMLR
NFMRDRGTQW TLGTFVGTFT FAILVLISIG PGKHGDFVPH ASISAVLFLA LVDVFILIYF
IHHIAVQIQL PYVIASIASD VVKAIEGEAA PPAGGPKLGP TPQEILATLK DEHGVVTASE
SGYLQYVSHS KLVRIATEAD AVIHLLYRPG HFIVAGRLLA TVTPPDAAPH VKEALRRAHL
NGPYRSLTQD ISFGIDQLVE IAVRALSQAV NDPFTALTCI DWIGDSLRQV ALRWHPQVVH
RDRAGYVRLI RTQASYDRLV RRGFEKVRQA SGGVPSVMIR ELQALKEIMA QAPRVEQYAV
LREQADMIKT SAEQSIPEPR DLADVVSVYD ELVALHERLL RETGD
|
|---|
| |