Gene Caci_4543 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4543 
Symbol 
ID8335897 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp5171553 
End bp5172236 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content71% 
IMG OID644957645 
ProductAzlC family protein 
Protein accessionYP_003115247 
Protein GI256393683 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1296] Predicted branched-chain amino acid permease (azaleucine resistance) 
TIGRFAM ID[TIGR00346] 4-azaleucine resistance probable transporter AzlC 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.876046 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.629194 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTTCGA TGTGGAGAAC GATGGACCGC GACCTGCTCC GCGGCATCGC CGTGATGTGC 
GCGTCGGTCG GCTTGATCGG CGTCTCCTAC GGCGCGACCG CGGTCGCGGC GGGCCTTCCG
ATCTGGCTGC CGGTCCTCAC CGGCTTCCTG GTCCTCGCGG CGTCGTCGGA GTTGCTGTTC
GTCGGGGTCA TCGCCGCCGG AGGCGATCCC TTCGCCGGCG CGCTGGCCGG ACTCCTGGTC
AACGCGCGCC ACATCCCGTA CGGGCTCGCG GTGCCGGACG TCATCGAGAG CGGCTGGCGC
CGGATCCCCA GCACCCACCT GTTGAACGAC GAAACCGTGG TGTTGGCGCT GTCCCAGGAC
GACCTTCCCC GCAAACGCGC CGCCTACTGG CTGTGCGGTC TGGGAATCGT CGCCGTCTGG
CCGCTGTGCG CGCTGGCCGG CGGCCTTCTC GGCGCCCTGG TCCACAACAC CGACGCGCTG
GGCCTGGACG CGATGTTCCC AGCCGTCATC CTCGCGCTGA TCCTGCCCGC ACTCCGCGAC
CGGCACACGC TACGGGCCGC ACTCGTCGGC GGAGCGGTAG CCATGGCCGC CTTCGCCTTC
CTGCCAGTGG GTTTGCCGGA GTTGCTGGCG CTGGTCGGGG TGCCGTTCGC CGGAGGCCTC
AGGCATGAGA GGTCCGTCGC GTGA
 
Protein sequence
MRSMWRTMDR DLLRGIAVMC ASVGLIGVSY GATAVAAGLP IWLPVLTGFL VLAASSELLF 
VGVIAAGGDP FAGALAGLLV NARHIPYGLA VPDVIESGWR RIPSTHLLND ETVVLALSQD
DLPRKRAAYW LCGLGIVAVW PLCALAGGLL GALVHNTDAL GLDAMFPAVI LALILPALRD
RHTLRAALVG GAVAMAAFAF LPVGLPELLA LVGVPFAGGL RHERSVA