Gene Caci_4520 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4520 
Symbol 
ID8335874 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp5147877 
End bp5148782 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content70% 
IMG OID644957622 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_003115224 
Protein GI256393660 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.20807 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.604183 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGCGA CAGTCAACCT CGCCCCGGCC GGCCTCAAGC CCCGCACGCG CCACCCGGCG 
TGGGCGGCCT TCCGCCGGGC GGTGACCCGC AAGCCGGGCC GCCTGGCCGG CCTGATCATC
ATTGTGTTCT TCATCCTGCT GGCGATCTGC GGGCCCTGGT TCTACGGCTC GCTGTCCGTC
GACCCGAACG AGCTGTACGC GCCGCCCAGC GCCAAGCACT GGCTGGGCAC CGACTTCGCC
GGCTCCGACG TGCTGCAGGA GGTGGTGACC GGCGCGCGCT ACGTGCTGGC CACCGCCGCG
CTGTCGGCAC TGTTCACCAG CCTGTTCGGC GTCACGGTCG GACTGGTCGC CGGCTACCAG
CGCGGCATGA CCGACAGCGT CCTGATGCGT CTGACGGACT TCGTCCTGAC GATCCCGGGC
CTGCCGCTGC TGATCATCCT GTCCACGGTG TGGAGCTTCG GCAGCCCGTG GGAGATGGGC
CTGGTGCTGG GCATCACCGG CTGGGGCGGG GTCGCCCGGG CCGTGCGCTC GCAGGCGCTG
TCGCTGCGCG AGCGCGGGTT CCTGGAAGCG GCGCGCGGTC TGGGGCTGTC CCGGCGGCAC
ATCATCGTCA AGGAGATGCT GCCGAACATC GCCCCCTACG CCGCCATGCA GCTGATGCTG
TCGGTGATCG GCTTCATCGG CGCCGAGGTC GGCCTGTTCT TCCTGGGGCT GGTGCCGTTC
TCCAGCACCA ACTGGGGTGT GATGCTGAAC CAGGCGGTGT TCTCCGGCGG GGCGATGGAG
ACCTCCTCGG CGCTGATCTA CCTGCTGGCG CCGCTGGTCT GCATCCTGCT GCTGACGCTG
GGCATCGTGC TCTTCCTGGA CGCCATCGAC GAACTGTTCA ACCCGCGGCT GAGGGAGCGC
GTGTGA
 
Protein sequence
MTATVNLAPA GLKPRTRHPA WAAFRRAVTR KPGRLAGLII IVFFILLAIC GPWFYGSLSV 
DPNELYAPPS AKHWLGTDFA GSDVLQEVVT GARYVLATAA LSALFTSLFG VTVGLVAGYQ
RGMTDSVLMR LTDFVLTIPG LPLLIILSTV WSFGSPWEMG LVLGITGWGG VARAVRSQAL
SLRERGFLEA ARGLGLSRRH IIVKEMLPNI APYAAMQLML SVIGFIGAEV GLFFLGLVPF
SSTNWGVMLN QAVFSGGAME TSSALIYLLA PLVCILLLTL GIVLFLDAID ELFNPRLRER
V