Gene Caci_4516 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4516 
Symbol 
ID8335870 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp5142495 
End bp5143463 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content76% 
IMG OID644957618 
Producttranscriptional regulator, RpiR family 
Protein accessionYP_003115220 
Protein GI256393656 
COG category[K] Transcription 
COG ID[COG1737] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.937314 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACTG GCGCGAATCG GGCATCCCGT GGCGGGCGCG GAGCGGGCTC CGGCGGTGCG 
GCGGTCGCTG CGGCCGGGGT GTCCGTGCCG CTGATCGAGG CCGGGCCGCC GCCGACCGTG
CTGGTGCGGA TCAGGGCTCT GCTGCCGACG CTGCCGCCCT CGGAGCGGCG GGTCGCCGAA
GCGGCGGTCG CCGATCCGGC GGGCGTGGCC GCCAAGACCA TCAGCGAGCT GGCCGCGGAC
TGCGACACCT CGGAGACCAC GGTCATCCGG TTCTGCCGCG CGGTCGGGCT CAAGGGGTAC
CCGGAGCTGC GGATCGGGCT GGCCGCCGCG GCCGGGATCG AGGACGCCGC GGTCGGCGCG
CACACCGCCG GCGGCGACAT CGGGCCCGGC GACTCGCTGG CCGACGTGGT GACCAAGCTC
GGCTACGCCG ACGCCCGCGC GGTCGAGGAC ACCGTCGCGC AGCTGGACCT GGAGGTGCTG
GAGCGCGCGG TGGACGCCGT GGTCTCGGCC GGCGCGGTGG ACGTCTACGG CATCGGCGCC
AGCGCCCTGA TCGCCCTGGA CCTGCACCAG AAGCTGCACC GCATCGGCCA CCGCGCCTTC
GCCTGGCCCG ACGCCGAAGC CGCGCTGACC TCGGCGGCGC TGCTCGGACG CGGCGACGTC
GCGATCGGCA TCTCGCACAC CGGCGCCACC CCGGCGACCG TCACCGCCTT GGCTGAGGCG
CACGACAACG GCGCCCGCAC CATCGCCATC ACCAACTTCC CCCGCTCGCC GATCACCGAC
GTCGCCGACC TGGTCCTGAC CACCGCCGTC CGCGAGACCA CCTTCCGCTC CGGCGCCATG
GCCAGCCGCA TCGCCGCCCT GACCGTGGTC GACTGCCTGT TCGTCGGCGT CGCCCAGCGC
AACTTCAGCC GCACGACCCG CGCCCTGGAG CGCACGCGGA GCGCCGTGCA GGGCGCGCGG
GGGCGATGA
 
Protein sequence
MSTGANRASR GGRGAGSGGA AVAAAGVSVP LIEAGPPPTV LVRIRALLPT LPPSERRVAE 
AAVADPAGVA AKTISELAAD CDTSETTVIR FCRAVGLKGY PELRIGLAAA AGIEDAAVGA
HTAGGDIGPG DSLADVVTKL GYADARAVED TVAQLDLEVL ERAVDAVVSA GAVDVYGIGA
SALIALDLHQ KLHRIGHRAF AWPDAEAALT SAALLGRGDV AIGISHTGAT PATVTALAEA
HDNGARTIAI TNFPRSPITD VADLVLTTAV RETTFRSGAM ASRIAALTVV DCLFVGVAQR
NFSRTTRALE RTRSAVQGAR GR