Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_4516 |
Symbol | |
ID | 8335870 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 5142495 |
End bp | 5143463 |
Gene Length | 969 bp |
Protein Length | 322 aa |
Translation table | 11 |
GC content | 76% |
IMG OID | 644957618 |
Product | transcriptional regulator, RpiR family |
Protein accession | YP_003115220 |
Protein GI | 256393656 |
COG category | [K] Transcription |
COG ID | [COG1737] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.937314 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCACTG GCGCGAATCG GGCATCCCGT GGCGGGCGCG GAGCGGGCTC CGGCGGTGCG GCGGTCGCTG CGGCCGGGGT GTCCGTGCCG CTGATCGAGG CCGGGCCGCC GCCGACCGTG CTGGTGCGGA TCAGGGCTCT GCTGCCGACG CTGCCGCCCT CGGAGCGGCG GGTCGCCGAA GCGGCGGTCG CCGATCCGGC GGGCGTGGCC GCCAAGACCA TCAGCGAGCT GGCCGCGGAC TGCGACACCT CGGAGACCAC GGTCATCCGG TTCTGCCGCG CGGTCGGGCT CAAGGGGTAC CCGGAGCTGC GGATCGGGCT GGCCGCCGCG GCCGGGATCG AGGACGCCGC GGTCGGCGCG CACACCGCCG GCGGCGACAT CGGGCCCGGC GACTCGCTGG CCGACGTGGT GACCAAGCTC GGCTACGCCG ACGCCCGCGC GGTCGAGGAC ACCGTCGCGC AGCTGGACCT GGAGGTGCTG GAGCGCGCGG TGGACGCCGT GGTCTCGGCC GGCGCGGTGG ACGTCTACGG CATCGGCGCC AGCGCCCTGA TCGCCCTGGA CCTGCACCAG AAGCTGCACC GCATCGGCCA CCGCGCCTTC GCCTGGCCCG ACGCCGAAGC CGCGCTGACC TCGGCGGCGC TGCTCGGACG CGGCGACGTC GCGATCGGCA TCTCGCACAC CGGCGCCACC CCGGCGACCG TCACCGCCTT GGCTGAGGCG CACGACAACG GCGCCCGCAC CATCGCCATC ACCAACTTCC CCCGCTCGCC GATCACCGAC GTCGCCGACC TGGTCCTGAC CACCGCCGTC CGCGAGACCA CCTTCCGCTC CGGCGCCATG GCCAGCCGCA TCGCCGCCCT GACCGTGGTC GACTGCCTGT TCGTCGGCGT CGCCCAGCGC AACTTCAGCC GCACGACCCG CGCCCTGGAG CGCACGCGGA GCGCCGTGCA GGGCGCGCGG GGGCGATGA
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Protein sequence | MSTGANRASR GGRGAGSGGA AVAAAGVSVP LIEAGPPPTV LVRIRALLPT LPPSERRVAE AAVADPAGVA AKTISELAAD CDTSETTVIR FCRAVGLKGY PELRIGLAAA AGIEDAAVGA HTAGGDIGPG DSLADVVTKL GYADARAVED TVAQLDLEVL ERAVDAVVSA GAVDVYGIGA SALIALDLHQ KLHRIGHRAF AWPDAEAALT SAALLGRGDV AIGISHTGAT PATVTALAEA HDNGARTIAI TNFPRSPITD VADLVLTTAV RETTFRSGAM ASRIAALTVV DCLFVGVAQR NFSRTTRALE RTRSAVQGAR GR
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