| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4469 |
|---|
| Symbol | |
|---|
| ID | 8335823 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 5091876 |
|---|
| End bp | 5092694 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644957571 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003115173 |
|---|
| Protein GI | 256393609 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.777367 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCGG ACGGATTGGC CGGCAGGACG GCCCTGATCA CCGGAGCGGG CTCGGGCATC
GGCCGGGCCG TCGCCGTGGC GCTGGCCGCC GCCGGCGCCC GGGTGATCGT GGCCGGCCGG
ACCGCCGCGA CGCTGGAGCA GACCGTCAAG CTGGCCGACG AGGCGACCGC TGTGTGGGGC
GGCGAGTCGC TTGTGCGCGG CCAATCCTGG GCGCCGGCCG TGGCTGCCGG CGCCCAGGCC
CATATCGCCG ACGTCACCGA TCCGGCGGCG GTGCGGGCGT TGCTCGTCGC CGTCGAGCGC
GAGCACGGCG GCCTCGACAT CGCGGTGAAC AACGCCGGGC GCCCTTCTTG GGGTCCGGTC
GCCCGGATCG CCCCCGCCGA ATGGGACGCC GTGCTCGGCG TGAACCTCAC CGGTGTGTGG
CTGTGCCTGC AGCACGAGCT GGACCTGATG CGCCGCAGCG GCGGGGGAGC GGTGGTCAAC
ATCGTCTCCC GCCTCGGCAT CCCGACGCGC GAGGAGAATC AGAACGCGTA CGCGGCCAGC
AAGGCCGCTC TGAGCATCCT GACGCGTACC GCGGCGCGCG AGTACGTCGG CTCGGGCATC
CGCGTCAACG CCGTGAGCCC CGGCCCGACC GACACCGCCA TGACCGTCTG GGACCAGGAG
ACGCCGGCCG AGCGCGACGA GCGCGTGGCC CGCACCGTCC CGATCGGCCG CCTGGCCGCG
CCCGCCGAGA TCGCCGCCGC CGTGCGCTGG CTGGTCTCCG ACGAGGCCTC CTACGTCGTC
GGCCACGACC TGGTGGTCGA CGGAGGGCTG AGCGCCTGA
|
|---|
| Protein sequence | MRADGLAGRT ALITGAGSGI GRAVAVALAA AGARVIVAGR TAATLEQTVK LADEATAVWG
GESLVRGQSW APAVAAGAQA HIADVTDPAA VRALLVAVER EHGGLDIAVN NAGRPSWGPV
ARIAPAEWDA VLGVNLTGVW LCLQHELDLM RRSGGGAVVN IVSRLGIPTR EENQNAYAAS
KAALSILTRT AAREYVGSGI RVNAVSPGPT DTAMTVWDQE TPAERDERVA RTVPIGRLAA
PAEIAAAVRW LVSDEASYVV GHDLVVDGGL SA
|
|---|
| |