| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4438 |
|---|
| Symbol | |
|---|
| ID | 8335792 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 5045852 |
|---|
| End bp | 5046880 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644957541 |
|---|
| Product | transcriptional regulator, LacI family |
|---|
| Protein accession | YP_003115143 |
|---|
| Protein GI | 256393579 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.0401839 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGGACA TCCGCGAGCT GGCACGCCTC AGCGGCGTCT CCCCCGCCAC CGTCTCGCGC
GCCCTCAACG ACCGGGCCGA GGTGAGTCCG GAGACCCGGC GACGGATCCT GGAGATGGCC
GAGCGGCTCG GGTACTCCCC GAACCAGCCG GCGCGCACGC TGGTACGGCG GCGCTCGGAC
ATGATCGGGC TGATCTGGGA TACCGGCTAT ACCAACCAGG ATCGGCGGCA TCCGTTCCTG
CTGGACCTGT TCGTCGGGAT CAAGCAGACG CTCGCCGAGT CCGGGTACCA CCTGATGGTG
CTCTCCACGG CCGGCGCCGC GAGCCCCGGC GACGTCGGTC TGTACCTGCG GGCGTCCCAG
CAGCACAGCC TGGCGGGCGT CATCATGATG GGCGTCGACG CCACACATCC GGCGATCACA
GCACTCGTCG ACGCGGGCAC ACCCTGCGTC GGCATCGACC TGCCGCTGCA CCGCAACCGC
ACGACGTACG TCACCTCCGA CAACCGCGCC GGCGCCGCGA CCGCCGTCCG CCATCTGCAC
GGCCTCGGAC ACACCGCGAT CGCCACGATC ACCGGCCCGC TGACCATGAT GCCCGCGACC
GAACGCCTAG CGGGCTACCG CGAGGAGATG GCCCGCCTGA ACCTCGAACC GAACCCGCAC
CACATCGTCG ACGGCGACTT CTTCCTCGCC AGCGGCTACG AAGCCGCCCG CCGCCTGACC
GAACTCCCGC ACCCGCCCAC CGCGATCTTC GCCGCCGGCG ACGAAATGGC CATCGGCGCC
CTGCACGCCC TAGCCGACGC CGGCCTCCGC GTCCCCCACG ACATGGCAGT AGTCGGCTTC
GACGACATCG AAGCCGCAGC CCTGGTCCGC CCGACACTCA CCACCGTCGC CCAGGACCGC
GTCGCACTCG GCGCAGGCGC AGTCGAGGCA CTCGTCGACG CACTGGACGC CGACGACGGC
ACGGCGCACG CGCCGCTGCA GGTGGCGACG CGGCTGGTGG TGCGGGGGTC TTGCGGGGCT
GAGGGTTAG
|
|---|
| Protein sequence | MVDIRELARL SGVSPATVSR ALNDRAEVSP ETRRRILEMA ERLGYSPNQP ARTLVRRRSD
MIGLIWDTGY TNQDRRHPFL LDLFVGIKQT LAESGYHLMV LSTAGAASPG DVGLYLRASQ
QHSLAGVIMM GVDATHPAIT ALVDAGTPCV GIDLPLHRNR TTYVTSDNRA GAATAVRHLH
GLGHTAIATI TGPLTMMPAT ERLAGYREEM ARLNLEPNPH HIVDGDFFLA SGYEAARRLT
ELPHPPTAIF AAGDEMAIGA LHALADAGLR VPHDMAVVGF DDIEAAALVR PTLTTVAQDR
VALGAGAVEA LVDALDADDG TAHAPLQVAT RLVVRGSCGA EG
|
|---|
| |