Gene Caci_4353 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4353 
Symbol 
ID8335707 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp4940417 
End bp4941439 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content70% 
IMG OID644957456 
ProductABC transporter related 
Protein accessionYP_003115058 
Protein GI256393494 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0121046 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.625584 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGCGG TGCTGGACGA CCCCGTCCTC GTCGTCGACA AACTCACCAA GACCTTCGGC 
TCCCGCACCG CCTACTCCGA CGTCAGCTTC ACCGTCGGCC GCGGCGAGGT CTTCGGCTTC
CTGGGCCCGA ACGGCGCCGG CAAGACCACG ACCGTCCGCA GCCTGGGCAC CCTGATCACC
CCGACCTCCG GCCGCGCGAC CGTCGCGGGC ATCCCGCTGG AGGCCGCCAA CGCCGTCGAG
ATCCGCAAGC GCATCGCGAT CATGACCGAG GCGCCGGGTC TGTACGGCCG GCTCTCGGTG
AAAGAGAACC TGCAGTACTT CGTCGGCCTC TACCACCTGG CGAACGGCGA GCAGCGCATC
AAGCGCGCGC TGGAGTCCGT CAACCTGACC GACCGCGCCA ACGACACCTG CAACAGCCTG
TCCAAGGGAC TGCGCCAGCG CGTCGGACTG GCCCGCACGC TGCTCAACGA CCCGGAGATC
CTGTTCCTGG ACGAGCCCAC GTCCGGCCTG GACCCGGTCG CGGCACGCGG CGTGCACGAC
CTGATCAGCG GCCTGCGGGA CCGCGGCGTC ACCATCTTCT TCACCACGCA CCGGCTGGCC
GAGGCCGAGT CGCTGTGCGA CCGCGTGGCG ATCCTGAACA CCACGCTGCG CACCATCGGC
AAGCCCTCGG AGCTGCGCGA GCAGTTGTTC CACAAGGGTT TGGTGGTGAC GACGGCCGCG
CCGCTGGCCG ACCCGGAGCG CGTCTTCGGC GGGCTGCCGG GCGTCGAGAG CTGGGACAAC
GACGGCGACG GCCGCGGCGG TCCGCGCCGC ACCGGCTCCG ACGCCAGCAC AGATACCGGT
ACCAGCACCG GCACCAGCAC CTACCGCCTC GCGGTCAGCG ACCCGACGCT CGCCGCCCCC
GAGGTCGTCA GAGCCCTGGT CCACGCACAA GCCGACGTCC TGTCGGTCGG CGAGTCCCGC
CACTCGCTGG AAGACGTCTA TCTGGAACTC GTCAACGAGG ATGTGGAGGC GAGTCAGCGA
TGA
 
Protein sequence
MTAVLDDPVL VVDKLTKTFG SRTAYSDVSF TVGRGEVFGF LGPNGAGKTT TVRSLGTLIT 
PTSGRATVAG IPLEAANAVE IRKRIAIMTE APGLYGRLSV KENLQYFVGL YHLANGEQRI
KRALESVNLT DRANDTCNSL SKGLRQRVGL ARTLLNDPEI LFLDEPTSGL DPVAARGVHD
LISGLRDRGV TIFFTTHRLA EAESLCDRVA ILNTTLRTIG KPSELREQLF HKGLVVTTAA
PLADPERVFG GLPGVESWDN DGDGRGGPRR TGSDASTDTG TSTGTSTYRL AVSDPTLAAP
EVVRALVHAQ ADVLSVGESR HSLEDVYLEL VNEDVEASQR