| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4338 |
|---|
| Symbol | |
|---|
| ID | 8335692 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 4928188 |
|---|
| End bp | 4928871 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644957441 |
|---|
| Product | 3-oxoacid CoA-transferase, A subunit |
|---|
| Protein accession | YP_003115043 |
|---|
| Protein GI | 256393479 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1788] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02429] 3-oxoacid CoA-transferase, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.359655 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGTAC AGCTGTGTAC CGACCCCGAT GAAGCGGTCG CCGGAATCGC CGACGGTTCC
ACCATCCTCG TCGGCGGTTT CGGCATGGCC GGGATGCCGG TCACGCTGAT CGACGCGCTC
ATCCGGCAGG GCGCCGCGGA CCTCACCATC GTCTCGAACA ACGCAGGCAA CGGCGATACC
GGGCTCGCGG CGCTCCTGGC GAAGCGCCGG GTGCGCAAGG TGATCTGCTC CTTTCCCCGC
CAATCCGACT CCTACGTCTT CGACGGGCTG TACCGCAGTG GCTCCATCGA GCTCGAAGTG
GTGCCGCAGG GAACGCTGGC CGAGCGCATG CGGGCCGCCG GCGCCGGAAT CGGCGCGTTC
TACTGCCCGA CGGGAGTCGG GACGCTGCTG GCCGAAGGTA AGGAGACGCG CGTCATCGAC
GGCCGTACCC ACGTCCTGGA ATACCCGATC CGGGGCGACG TGGCGTTGAT CGGCGCCCAC
CGCGCGGACC GGATGGGAAA CCTGGTCTAC CGCAAGACCG CGCGCAACTT CGGGCCGGTG
ATGGCGACAG CTGCGACACT GGTCGTCGTG CAGGTTCGGG AGGTCGTCAA CACCGGGGCG
ATCGATCCCG AGACCGTGGT GACGCCGGGC ATCTACGTCG ATCGCGTGCT GGTCCCGCCG
CTGCCCGGCG AGGCGAGCGC GTGA
|
|---|
| Protein sequence | MTVQLCTDPD EAVAGIADGS TILVGGFGMA GMPVTLIDAL IRQGAADLTI VSNNAGNGDT
GLAALLAKRR VRKVICSFPR QSDSYVFDGL YRSGSIELEV VPQGTLAERM RAAGAGIGAF
YCPTGVGTLL AEGKETRVID GRTHVLEYPI RGDVALIGAH RADRMGNLVY RKTARNFGPV
MATAATLVVV QVREVVNTGA IDPETVVTPG IYVDRVLVPP LPGEASA
|
|---|
| |