Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_4295 |
Symbol | |
ID | 8335649 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 4873006 |
End bp | 4874532 |
Gene Length | 1527 bp |
Protein Length | 508 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644957398 |
Product | Pyridoxal-dependent decarboxylase |
Protein accession | YP_003115000 |
Protein GI | 256393436 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0000243421 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | GTGAGCCCTC AGGCCTCCGC CGTCGCGACC GCGCGCGCCA TCTTCTCCCC CACCGTGGAT GACGCCGCCC GCCACCTGTT CAACGACCGG ACCCTGGACC GCTATCGGCA CACCATGGCC GACGGCGTCG AGCGCATTGC CGACCGCATA GCCCGCACCG ATCGTCCGTT CACCGGCGTC TCCCCCGACG ATCTCACCCC GGGCATATCA GGCATCGATC TCGACCGTCC GCTCGAGGAC ACGGCCGCGG CGCTGGACGA GCTCGAAGAC GTCTACCTGC GCGACGCCGT CTACTTCCAC CACCCGCGCT ACCTCGCACA CCTGAACTGC CCGGTGGTCA TCCCGGCGCT GCTCGGCGAG GCGGTCCTCA CCGCGGTCAA CTCCTCGCTG GACACCTGGG ACCAGAGCGC CGGCGGCACG CTGATCGAGC GCCGGCTGAT CGACTGGACC GCCGGACGGA TCGGCTTCGG GACGTCCGCC GACGGCATCT TCACCAGCGG CGGCAGCCAG TCGAACTTCC AGGCGCTGCT GCTGGCTCGG GAAGAAGCCT TGGCGAAAGC GGCGCTCGGC GCCTCCCGCG ACGTCATGGA CCGGCTTCGC ATCTTCGTCT CCGAAGCCGG GCACTTCAGC GTCCGCAAGT CGGCGAAGAT GCTCGGGCTG AGCCCGGACG CCGTGGTCAC CGTCGAGACC GACGCCCGCA AGCGGATGCG TCCGCAGGCG CTGGCGTGGG AGCTGGAGCA GTGCCGCTGG GCCGGGTTCA TCCCGATGGC GATCGTGGCC ACCGCCGGGA CGACCGACTT CGGATCCATC GACCCGCTGC CGGCGATCGC GAGGCTGTGC GCGGACTCTG GCGCCTGGTT CCACGTCGAT GCCGCGTATG GCTGTGGTCT GCTCGTCTCC CGCTCCCGGC GCGCTCTGCT CAACGGCATC GAGCGCGCCG ACTCGGTCAC CGTGGACTTC CACAAGTCCT TCTTCCAGCC GGTCAGCTCC AGTGCCCTCG TGGTGCGCGA GCGCGCGACC CTGTCCCACG CGACCTACCA CGCCGACTAC CTCAACCCGG CCCGCATGGT CGAGCAGCGC ATCCCCAACC AGGTCGACAA GAGCATCCAG ACCACGCGCC GCTTCGACGC GCTCAAGCTC TGGATGACGC TGCGGATCAT GGGTCCGGAC GCCGTCGGCG ACCTGTTCGA CGAGGTCATC GACCGTGCCG CGCAAGCCTG GGTCCTGCTC ACCGTCGATC CCCGGTTCGA GGTGGTGACG CGCTCGCAAC TCAGCACACT GGTGTTCCGC TACCTGCCGC CGGAGGGCGC GACGCGGGAC CTGGCCGACG GCGCGAACCT GTATGCCCGC GAAGCGTTGG CTTCCTCCGG CGCGGCGCTG GTCGCCGGGA CCAAGGTCGG CGACCGGCAC TACCTGAAGT TCACCCTGCT GAACCCCGAG ACCACGGTGG ACGACATCGC GCACGTCCTG GACCTGATCG CGGACCACGC AGCCGAATAC GTCGAGCGCC GGAGAAGGAC CTCGTGA
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Protein sequence | MSPQASAVAT ARAIFSPTVD DAARHLFNDR TLDRYRHTMA DGVERIADRI ARTDRPFTGV SPDDLTPGIS GIDLDRPLED TAAALDELED VYLRDAVYFH HPRYLAHLNC PVVIPALLGE AVLTAVNSSL DTWDQSAGGT LIERRLIDWT AGRIGFGTSA DGIFTSGGSQ SNFQALLLAR EEALAKAALG ASRDVMDRLR IFVSEAGHFS VRKSAKMLGL SPDAVVTVET DARKRMRPQA LAWELEQCRW AGFIPMAIVA TAGTTDFGSI DPLPAIARLC ADSGAWFHVD AAYGCGLLVS RSRRALLNGI ERADSVTVDF HKSFFQPVSS SALVVRERAT LSHATYHADY LNPARMVEQR IPNQVDKSIQ TTRRFDALKL WMTLRIMGPD AVGDLFDEVI DRAAQAWVLL TVDPRFEVVT RSQLSTLVFR YLPPEGATRD LADGANLYAR EALASSGAAL VAGTKVGDRH YLKFTLLNPE TTVDDIAHVL DLIADHAAEY VERRRRTS
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