| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4229 |
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| Symbol | |
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| ID | 8335583 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 4796011 |
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| End bp | 4798782 |
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| Gene Length | 2772 bp |
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| Protein Length | 923 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644957332 |
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| Product | transcriptional regulator, LuxR family |
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| Protein accession | YP_003114934 |
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| Protein GI | 256393370 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3899] Predicted ATPase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.099423 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGATGG TGGGTCGGGA AGCGGAGCAG GCCGAACTCG CGGCGTTCGT CAAAACCGCC
GCGGGTCAGG CGCTGGTCCT GCGCGGGGAG ACCGGCGTGG GCAAGAGCTC GCTGCTGGGC
CACGCCGCCG CGGTGGCCGA GCAGGAGGGC TACGCCGTCA TCCGCGCCTC GGGCGTCGAG
GCGGAGTCCG AGCTGCCCTA CGCCGGGCTG CACCAGTTCC TGCACCCGCT GCTGGCCGAC
GTCGCCGACC TCGACGATGG CAGCCAAGAG GTCTTCGACG CCGTCTTCGG CCGCGCCGAC
AGCGACCCGC CGTCGGTCAT GACCCTGGGC ATCGCCGTCC TGAGCCTGCT GTCCCTGGCC
GCCGCGCGCA AGCCGCTGCT CCTGGTCCTG GACGACGGGC AATGGCTCGA CGACTCCAGC
GCCGACATCT GCGGCTTCGT CGGCCGCCGC CTGGCCGGCA GCCCGGTGAA GCTGCTGGTC
GGCGTCCGCA CCGACATCGC CTCGCGCTTC GACACCGCCG CGCTGCCCGA ACTCCCGATC
GCCGCCCTGA ACGACCAGGA CGCCGCGGCC CTGCTGACGC AGCGCTTTCC GACGCTGGGC
AAACAGATTC GGCGCCTGGT GTTGACCCAA GCCCAAGGAA ACCCGCTGGC GTTGCTGGAG
CTGCCGGCAC ACCTCGGCGG CGCGGCGATC CAAGGCGAGC CGGCGCTGGA AAGCCTCGTC
GGCGACCTCG GCATGCCGCT GCCCCGGCGG CTGCAACGCC TCTACGGCAG CCGCATCGCA
GCCCTGAGCG ATGCCATGCG CGCCGAGCTG CTGATGGGAG CCCTCGACGG CGCCGGCGCC
GGAGCCCGGC TCAGCCGCGG CGAGGCCGGA AGCGGACCCG GCGCGCGCTA CCGCATGCGC
GACGCCGACG AAGCAGTAGC CGCCGGACTG CTGGAGATCG AACCGGCCAC CGGCGACTTC
GCCTTCCGTC ATCCGCTGGT GCGCTCGGCG GTGGTGCAGA TGGCGACCCC CAACCAGCGC
CGTGCAGCTC ATCGCGCCCT GGCCCAGATC CACCGCGAGC ACCTGGAACG CCGCGCGACC
CACCTCGCCG CCGCGACCGT CGACCCCGAC GAGGAGGTCG CCGACATCCT GGAGGCGGCG
GCCGAGTCGG CGACCAAGCG CGGCGGCGCC CTGGCCGCGG TGGCGTGGCT GACCCGCGCC
GCCGAACTCA GCGTGGAGCA CACCAGCCGC TCCCGGCGGC TGGCTGACGC CGCGTTCGTC
GCCGGGCACG CCGCGCGCCT CGGTCAGGCG CACCGCCTCG TGCAGTACGG ACTCGCGCCG
GGTTCGACCG ACTCGGCGGC GTCGGTACTG GCCTCGGCGT ATCAGGCGCT GTATCAGGAC
GGCGACGTCC TCTCCACGCA CCGCCAGGTC GCCCTGGCGA TCCAGAAGCT GCGTGACACC
GGTCCCACCG AAGCCGACGA AGTCCTGACC CGGCTGGTCA ACCTCCTGCT GGCGATCAGC
CAGTACGCCG GGGACCGCGC AGCCTGGGAA CGTACGCAGG CGCTCCTAGC CGATCTGGGA
GACCTGATCA CCGAACGCTC ACGCCTGTAC GGCGACACCT GGAGCGACGT GATCCGGCAC
GGCGCCGGCA GCGCCGAGGT GATCGAACAG GCTGCTGCGA AGGTGGCGGG TCAGGAACCG
TGGGAGGTCA CGCGCCTGGC GGTCGCGGCA TATCACCTTG ACATCCTCAG CCGCTTCCGT
CCGCACCTGC GTGGCATCGT GGACCGCGAG TTGGAGACCG GCGCTGTCGC CAGCGGCATG
GTCATGCTCC ACCTGATCAT GCTGGACCAG ATGGCGGTCG GCGAGTGGGA CGGCGCGCAG
GACACCGGAC GGCGCGTGCT GGCGCTGGCC GTCGAGCACG GTCACGAGCT GTTCGCCACG
CAGAGCCGCG CCTACCTCGC CCAGCTCGCC GCGCTGCGCG GACAGCTGGG ACCGGCGCGC
GACTTGCAGG CCGAAGTGGA CGCTTGGGCC CGCCCGCGCG GACTCGGCTT CCTGACTCAG
CTCGCTGACT CCGCCGGCGC GACGGCTGCG CTGAGCGCAG GCGACTACGA GACCGCCTAC
CTATACGCCA TCGGCATCAC GCCGCCGGGG GAGTTCCGCC CCTATGCGTA TCAGGCTTCG
CGGACGCTGC TGGACTTGGT CGAAGCCGCC CGCCACACCG GGCGCACTGA GCAGGCGCGG
CAGCATGCCC TGGCCGCACG CGACGCCGAC CTGCCGAAGA TCTCCCCGCG TCTGGCGCTG
CTGACCTACG GCGCGCTGGC GATGACCGCC GACGGCGAAC ACGAGGCGGC GGAGATGTTC
GCACTGGCCG AAGCACATCC CGACGCGGCC CGGTTCCCGT TCGAGCTGGC GCGCATCAGG
CTGGCGCACG GGATCCGGGT ACGGCACGTC GAGGGTCGTG CGGCGGCGCG GCGATATCTG
GTCCCGGCGG CGGAGGCTTT CGAGCGGTTG GGCGCTGCGG GCTGGACCGA GCGTGCGCGC
GCTGAGCTGC GCGCGACCGG CGCCGTGCCG CGCGCCTCGA TGCTGAATCT GGCGTCGCTG
ACCTGGCAGG AACGCCGGAT CGCGGATCTG GCGGCCAGCG GGCTGACGAA CAAAGAGATC
GGCAAGCGGA TGCACTTGTC GCCGCGCACC GTCAGCTCCC ACCTGTATCG GATCTTTCCG
AAGCTGGGGA TCACGACGCG CGCCGCGTTG CGGGACGCGT TGAGCCGGAC GGAGGAAGGT
CCGCAGAGTT GA
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| Protein sequence | MAMVGREAEQ AELAAFVKTA AGQALVLRGE TGVGKSSLLG HAAAVAEQEG YAVIRASGVE
AESELPYAGL HQFLHPLLAD VADLDDGSQE VFDAVFGRAD SDPPSVMTLG IAVLSLLSLA
AARKPLLLVL DDGQWLDDSS ADICGFVGRR LAGSPVKLLV GVRTDIASRF DTAALPELPI
AALNDQDAAA LLTQRFPTLG KQIRRLVLTQ AQGNPLALLE LPAHLGGAAI QGEPALESLV
GDLGMPLPRR LQRLYGSRIA ALSDAMRAEL LMGALDGAGA GARLSRGEAG SGPGARYRMR
DADEAVAAGL LEIEPATGDF AFRHPLVRSA VVQMATPNQR RAAHRALAQI HREHLERRAT
HLAAATVDPD EEVADILEAA AESATKRGGA LAAVAWLTRA AELSVEHTSR SRRLADAAFV
AGHAARLGQA HRLVQYGLAP GSTDSAASVL ASAYQALYQD GDVLSTHRQV ALAIQKLRDT
GPTEADEVLT RLVNLLLAIS QYAGDRAAWE RTQALLADLG DLITERSRLY GDTWSDVIRH
GAGSAEVIEQ AAAKVAGQEP WEVTRLAVAA YHLDILSRFR PHLRGIVDRE LETGAVASGM
VMLHLIMLDQ MAVGEWDGAQ DTGRRVLALA VEHGHELFAT QSRAYLAQLA ALRGQLGPAR
DLQAEVDAWA RPRGLGFLTQ LADSAGATAA LSAGDYETAY LYAIGITPPG EFRPYAYQAS
RTLLDLVEAA RHTGRTEQAR QHALAARDAD LPKISPRLAL LTYGALAMTA DGEHEAAEMF
ALAEAHPDAA RFPFELARIR LAHGIRVRHV EGRAAARRYL VPAAEAFERL GAAGWTERAR
AELRATGAVP RASMLNLASL TWQERRIADL AASGLTNKEI GKRMHLSPRT VSSHLYRIFP
KLGITTRAAL RDALSRTEEG PQS
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