Gene Caci_4215 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4215 
Symbol 
ID8335569 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand+ 
Start bp4779030 
End bp4779698 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content70% 
IMG OID644957318 
Producttranscriptional regulator, GntR family 
Protein accessionYP_003114920 
Protein GI256393356 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.162899 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.774443 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGATC TGGCCCTGTC GTCCCCCACG GGACCGCAAC CCGGCGCACT GCCGTCCCGC 
ACCGAAGCGG TGCTGGAAGC CGTCAAGCAC GCCATCCTGA CCGGCGAGCT GAAGCCCGGG 
CAGCCGCTGG TCGAGATCGA GCTGGCGGCC AAACTCGGGG TGTCGAAGAC GCCGGTGCGC 
GAAGCGCTGA AGACGCTGGC GGGAACCGGG CTGGTCATCA TGAGCCCTTA CAAGGGCGGC 
GCGGTACGGG AGATGGACCG CTCCCACGCG CGTTGCATCT ACGACATGCG GCTGCTGCTG 
GAACCCGTGG CGGCCGGCCG GACCGTCGCC GCCCGGGGCG ACTGGTCGGC GGCGCGGCGT 
GCGTTGGAGG CGGCGGACAA GGCAGCCGAC GCAGCCGAGC GTTCGTTGGC CAACCGCGTG 
TTCCACCGCG AGATGTACCT CGGCTGCGGC AACGCCTTGC TGGTACGGAC GTTGGACGAT 
CTGCGCGACC AGACCGCGCT GGTGTCGGCG GCGGCGTGGG CCCAGCGTCC CTCCTGGGAG 
CGGGAGGCGG CCGAGCACCG GGCGATCCTG GCGGCCGCCG AGCATGGGGA CAGCGATGAG 
GCAAGGAACC TGATGCGCAG TCATATCAGC TCGTTCGTGG CGCGCAACTT CCCCGAGAAC 
GAAGCCTGA
 
Protein sequence
MSDLALSSPT GPQPGALPSR TEAVLEAVKH AILTGELKPG QPLVEIELAA KLGVSKTPVR 
EALKTLAGTG LVIMSPYKGG AVREMDRSHA RCIYDMRLLL EPVAAGRTVA ARGDWSAARR 
ALEAADKAAD AAERSLANRV FHREMYLGCG NALLVRTLDD LRDQTALVSA AAWAQRPSWE 
REAAEHRAIL AAAEHGDSDE ARNLMRSHIS SFVARNFPEN EA