| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4195 |
|---|
| Symbol | |
|---|
| ID | 8335549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 4749045 |
|---|
| End bp | 4750823 |
|---|
| Gene Length | 1779 bp |
|---|
| Protein Length | 592 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644957298 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_003114900 |
|---|
| Protein GI | 256393336 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.445902 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.487946 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCGC CGGTCCCGCT GTATCGCAGC CTGCTGGTAC GGCTGCTCGC CGCGTCCTGT
GTGATCGCCG GCTGCGCCAT CGCCGCCACC GCGTGGATCG CCGCCTCGAC CGCCACCTCG
GCGCTGGCCC GCCAGCAGGG CCAGACGCTC CAGACCGACA CCGACATCGT CTCCCAGCTG
AGCGGCTACG CCGTCGGGCA CACCGACTGG ACCGGCGTCG CACCCCTGCT GCGTCAACTG
ACCGAGCGCT ACCAACTGCG CATCGCGCTG GTCGGGACCG ACGGCAAGAT GATCAGCGAC
TCCTCCGCGC AGCCGGCGCC GCTGCCGCCC AGCGATATCG CCACCATCGA TCCGCTCAGC
TTCGACACCT CCACGACGCC GGGGGTGCAG AAGCCGGGAC TGGACCCGCG CGTCATCGGC
CCGTACCAGC TCACCCCGGA CGAATCCAAC ACCCTGCGGC AGATGGCGGA CAAAGGCCTG
CTCTGCCTGA CCAAGTACGG CGGGCAGGCA CAGTTGGTCG AGCTGTTGTC GGGCAGGTAT
GTGCTCCAGC AGAGCGGCGC GCCGCAGAGG GCCACGGACA TCTGCGGAAA TCCCAACCAG
TACGTCGTCC CCGCGACACC GACCGAGGTC AAGCCGCTGG CGGATCTGGC GGCGGCGACG
TCGGCGTGTC TGGTCCACGA GCGTCTGCCC GTGCCGCCGA ATCTGAGCGT CACCACCGCT
TTTCAGGTGC AGTCCTCCCA ACCGGCGAGC GCGTCGATGA AGCCCGCCCA GCAATGCCTG
CAGACGGCGC GGCGGGACCA ACTCCGCCCC TACGTCGCCG CACCGGCCCA GCTCTACCTC
GGCATCGGGA CCACCGCGCG CGAGCACTTC GACCTGTCCG GACCGAACCG CTCCAAAATC
ATCTGGACCG CGGCCCTGGT CCTGGCGGTC ACCGTCGCGG TGACCGCGCT CGCCGGGCTG
CGGCTGGTCC GGCCGCTGCG GGCGCTGATC TACACCGCGC GCCAGGACCC CGCCGACTTC
GCCCGGGCGC CGGTCACCAC CCGGGACGAG ACCGGATACC TGGCGATGGC GTTCAACCAG
CTCACCGAGC GCCGCGAGCA GATGGACGCC CAGCGCAAGG CGATGGTCGC CGACATCGCC
CACGAACTGC GCTCCCCGCT GACCAACATC CGCGGCTGGC TGGAGGTCAC CCGCGACGGG
CTCGTCGAGC CCACCCCGGA CCTGATCACC TCCCTGCACG ACGAGGCCGT GGTGCTGCAA
CGCGTCATCG ACGACCTCCA GGACCTCGCC AGCGCCGACG CCGGAACCCT GCGGGTGCAC
CCGCAACCGA TCGCCGCCCT CGACCTGCTG CAGCAAGTCG CGCTCGCGCA CCGAGCCCAG
GCAGCCGACC TCGGGATCAC CGTGGAGGTG CACGCCGAGC CCGGGCTGGA CGTCTACGCC
GACCCGGAAC GGATCCGCCA GGTGCTGGGG AACCTGGTGT CCAACGCGGT GCGGCACTCG
GCGAGCGGCG CTCACGTCAC TCTGACGGCG CGCCCCACTG CGGACGGCGT CGAGCTCAGC
GCGCAGGACA CCGGTTGCGG CATCGCGCAG GCGGACCTGC CGTACATCTT CGATCGGTTC
TGGCGCTCGG AGAAGTCGCG CAACCGCGGC ACAGGCGGCA GTGGGCTGGG GTTGGCGATC
GCGCGTCATC TAGTCCTAGC TCATGGAGGC ACGATCACCG TGGAGAGCTT TGTCGGGGTC
GGGACGACGA TGACGGTGCG ATTGCCACCG CCGTGCTGA
|
|---|
| Protein sequence | MAAPVPLYRS LLVRLLAASC VIAGCAIAAT AWIAASTATS ALARQQGQTL QTDTDIVSQL
SGYAVGHTDW TGVAPLLRQL TERYQLRIAL VGTDGKMISD SSAQPAPLPP SDIATIDPLS
FDTSTTPGVQ KPGLDPRVIG PYQLTPDESN TLRQMADKGL LCLTKYGGQA QLVELLSGRY
VLQQSGAPQR ATDICGNPNQ YVVPATPTEV KPLADLAAAT SACLVHERLP VPPNLSVTTA
FQVQSSQPAS ASMKPAQQCL QTARRDQLRP YVAAPAQLYL GIGTTAREHF DLSGPNRSKI
IWTAALVLAV TVAVTALAGL RLVRPLRALI YTARQDPADF ARAPVTTRDE TGYLAMAFNQ
LTERREQMDA QRKAMVADIA HELRSPLTNI RGWLEVTRDG LVEPTPDLIT SLHDEAVVLQ
RVIDDLQDLA SADAGTLRVH PQPIAALDLL QQVALAHRAQ AADLGITVEV HAEPGLDVYA
DPERIRQVLG NLVSNAVRHS ASGAHVTLTA RPTADGVELS AQDTGCGIAQ ADLPYIFDRF
WRSEKSRNRG TGGSGLGLAI ARHLVLAHGG TITVESFVGV GTTMTVRLPP PC
|
|---|
| |