| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4171 |
|---|
| Symbol | |
|---|
| ID | 8335525 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 4727123 |
|---|
| End bp | 4728142 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644957274 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003114876 |
|---|
| Protein GI | 256393312 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.209529 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCT CGAACGACAG GCACGAGCTG CCCGAGCCGC ACGACCTGCA CGACCTCGAA
GCGCAAGCCG CGCGCCCCCG CCGTCAGTAC GGCCACGACG CGCACATCGT CTGCGACAAC
CTGGTCCGCA TCTACCAGAC CGAAGGCGTC GAGGTGCAGG CGCTTCAGGG CCTTGACCTG
CTCGTCGACC GGGGCGATCT GGTCGCGGTC GTCGGCGCCT CGGGCAGTGG CAAGTCCACG
CTGCTCAACA TCCTGTCGGG CCTGGACACC CCCACCGCCG GCGGCGCCCG CGTAGCCGGC
TGCGACCTGC TGGCGATGAA GGCCAAGGAC CGCCTCCGCT ACCGGCGCGA GGTCGTCGGC
TTCGTCTGGC AGCAGACTGG CCGCAACCTG TTCTCCCACC TGGACGCCCT GGACAACGTC
ATGCTCCCGA TGAGCTACGC CGGAACCCGC GGCGCCGCCG CCGAGCGCAA AGCCGGCGAG
CTGCTGGACC TGCTCGGCGT CGGGCACGCC CGCGACCGCC GCCCCGCCGG GCTGTCCGGC
GGCGAGCAGC AGCGCGTGGC GATCGCCGTG GCGCTGGCCA ACACGCCTGA CGTGCTCTTC
GCCGACGAGC CGACCGGAGA GCTGGACAGC GCGACCGCGC ACCAGGTCTT CGAGGCGCTG
CGGACGGCGA ACCGCGAACT CGGCGTGACC GTGGTCGTGG TGACGCACGA CGCCGACGTC
GCCGGACAAG TGCGGCGCAC CGTGGCGATC CGCGACGGCA AGACCAGCTC GGAGACCGTG
CGAGCGGTGG CAGTGGACGA AGACGGCGCC GAACGCCACG TCGCCGAGGA GTACGTGATG
CTCGACCGAG CCGGACGGAT GCAGCTGCCC CGGGAGTACG TCGAGCGCCT GCAGATGCGG
GACCGCGTAC GGGTGGCGCT GGACGAGGAC CACGTCAGCG TCTGGCCGGC GGCAGATGCC
GGAAACGATG GTGACGCCGG GGATGAACGC GAAGCGAGAG AGCCGGTCCC GGCTGAGTGA
|
|---|
| Protein sequence | MTASNDRHEL PEPHDLHDLE AQAARPRRQY GHDAHIVCDN LVRIYQTEGV EVQALQGLDL
LVDRGDLVAV VGASGSGKST LLNILSGLDT PTAGGARVAG CDLLAMKAKD RLRYRREVVG
FVWQQTGRNL FSHLDALDNV MLPMSYAGTR GAAAERKAGE LLDLLGVGHA RDRRPAGLSG
GEQQRVAIAV ALANTPDVLF ADEPTGELDS ATAHQVFEAL RTANRELGVT VVVVTHDADV
AGQVRRTVAI RDGKTSSETV RAVAVDEDGA ERHVAEEYVM LDRAGRMQLP REYVERLQMR
DRVRVALDED HVSVWPAADA GNDGDAGDER EAREPVPAE
|
|---|
| |